{ "type": "genome", "identifier": "GCF_001469295.1", "organism": "Streptococcus gordonii", "title": "Streptococcus gordonii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Slagelse Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001469295.1", "bioproject": "PRJNA224116", "biosample": "SAMN04306534", "wgs_master": "LOBS00000000.1", "refseq_category": "na", "taxid": "1302", "species_taxid": "1302", "organism_name": "Streptococcus gordonii", "infraspecific_name": "strain=ATCC 10558", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/12/18", "asm_name": "ASM146929v1", "asm_submitter": "Slagelse Hospital", "gbrs_paired_asm": "GCA_001469295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/469/295/GCF_001469295.1_ASM146929v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2164016", "genome_size_ungapped": "2154510", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001469295.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2122", "protein_coding_gene_count": "2028", "non_coding_gene_count": "37", "pubmed_id": "26893427" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-12-18", "dateModified": "2015-12-18", "datePublished": "2015-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus gordonii" ], "sample_taxid": [ "1302" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Infective Endocarditis" ], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.611 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2164016", "Number of Sequences": "12", "Longest Sequences (bp)": "632776", "N50 (bp)": "277669", "Gap Ratio (%)": "0.439276", "GCcontent (%)": "40.5", "Number of CDSs": "2046", "Average Protein Length": "308.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "2", "Number of tRNAs": "30", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus gordonii", "strain": "strain=ATCC 10558", "accession": "GCA_001469295.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 713, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=CCUG 33482", "accession": "GCA_001553855.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9855, "matched_fragments": 702, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=NCTC7865", "accession": "GCA_900475015.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9841, "matched_fragments": 713, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=FDAARGOS 1454", "accession": "GCA_019046945.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9819, "matched_fragments": 714, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 86.5316, "matched_fragments": 419, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_011612585.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 84.1033, "matched_fragments": 359, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000187855.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 84.0999, "matched_fragments": 349, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sinensis", "strain": "strain=HKU4", 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