{
    "type": "genome",
    "identifier": "GCF_001469865.1",
    "organism": "Haloferax profundi",
    "title": "Haloferax profundi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Red Sea Research Center, Saudi Arabia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001469865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04318427",
        "wgs_master": "LOPV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1544718",
        "species_taxid": "1544718",
        "organism_name": "Haloferax profundi",
        "infraspecific_name": "strain=SB29",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/12/18",
        "asm_name": "ASM146986v1",
        "asm_submitter": "Red Sea Research Center, Saudi Arabia",
        "gbrs_paired_asm": "GCA_001469865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/469/865/GCF_001469865.1_ASM146986v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3830759",
        "genome_size_ungapped": "3830759",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "716",
        "contig_count": "716",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001469865.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "4253",
        "protein_coding_gene_count": "3888",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-12-18",
    "dateModified": "2015-12-18",
    "datePublished": "2015-12-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haloferax profundi"
        ],
        "sample_taxid": [
            "1544718"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Saudi Arabia: Discovery deep brine-seawater interface, Red Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.075 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 28.0,
            "max": 28.0
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3830759",
        "Number of Sequences": "716",
        "Longest Sequences (bp)": "68196",
        "N50 (bp)": "16292",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.9",
        "Number of CDSs": "3320",
        "Average Protein Length": "273.8",
        "Coding Ratio (%)": "71.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Haloferax profundi",
                "strain": "strain=SB29",
                "accession": "GCA_001469865.1",
                "taxid": 1544718,
                "species_taxid": 1544718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 991,
                "total_fragments": 1005,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haloferax litoreum",
                "strain": "strain=MBLA0076",
                "accession": "GCA_009674605.1",
                "taxid": 2666140,
                "species_taxid": 2666140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5145,
                "matched_fragments": 877,
                "total_fragments": 1005,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax marinisediminis",
                "strain": "strain=MBLA0077",
                "accession": "GCA_009674585.1",
                "taxid": 2666142,
                "species_taxid": 2666142,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9374,
                "matched_fragments": 815,
                "total_fragments": 1005,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax marinum",
                "strain": "strain=MBLA0078",
                "accession": "GCA_009674625.1",
                "taxid": 2666143,
                "species_taxid": 2666143,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8961,
                "matched_fragments": 790,
                "total_fragments": 1005,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax marisrubri",
                "strain": "strain=SB3",
                "accession": "GCA_001469875.2",
                "taxid": 1544719,
                "species_taxid": 1544719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0312,
                "matched_fragments": 730,
                "total_fragments": 1005,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax sulfurifontis",
                "strain": "strain=CCM 7217",
                "accession": "GCA_014635105.1",
                "taxid": 255616,
                "species_taxid": 255616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7812,
                "matched_fragments": 720,
                "total_fragments": 1005,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax mediterranei",
                "strain": "strain=CGMCC 1.2087",
                "accession": "GCA_000306765.2",
                "taxid": 2252,
                "species_taxid": 2252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6776,
                "matched_fragments": 679,
                "total_fragments": 1005,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001469865.1",
                "gtdb_species": "s__Haloferax profundi",
                "ani": 99.9999,
                "matched_fragments": 991,
                "total_fragments": 1005,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009674605.1",
                "gtdb_species": "s__Haloferax sp009674605",
                "ani": 93.5145,
                "matched_fragments": 877,
                "total_fragments": 1005,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009674585.1",
                "gtdb_species": "s__Haloferax sp009674585",
                "ani": 86.9435,
                "matched_fragments": 814,
                "total_fragments": 1005,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009674625.1",
                "gtdb_species": "s__Haloferax sp009674625",
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                "matched_fragments": 790,
                "total_fragments": 1005,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001469875.2",
                "gtdb_species": "s__Haloferax marisrubri",
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                "matched_fragments": 731,
                "total_fragments": 1005,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
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                "mean_intra_species_ani": "95.85",
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                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000337835.1",
                "gtdb_species": "s__Haloferax sulfurifontis",
                "ani": 83.8506,
                "matched_fragments": 696,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 96.9285,
                "mean_intra_species_ani": "99.04",
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                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000306765.2",
                "gtdb_species": "s__Haloferax mediterranei",
                "ani": 83.6906,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
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                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.97",
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                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.179,
        "cell_length": 0.336,
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        "growth_tmp": 37.743,
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        "range_salinity": 1.0,
        "facultative_respiration": 0.09,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.333,
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    },
    "_genome_taxon": [
        "Haloferax",
        "profundi"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}