{
    "type": "genome",
    "identifier": "GCF_001471575.2",
    "organism": "Vibrio harveyi",
    "title": "Vibrio harveyi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001471575.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03996325",
        "wgs_master": "LOSK00000000.2",
        "refseq_category": "na",
        "taxid": "669",
        "species_taxid": "669",
        "organism_name": "Vibrio harveyi",
        "infraspecific_name": "strain=FDAARGOS_109",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/19",
        "asm_name": "ASM147157v2",
        "asm_submitter": "University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center",
        "gbrs_paired_asm": "GCA_001471575.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/471/575/GCF_001471575.2_ASM147157v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5758394",
        "genome_size_ungapped": "5758394",
        "gc_percent": "45.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001471575.2-RS_2024_05_31",
        "annotation_date": "2024-05-31",
        "total_gene_count": "5244",
        "protein_coding_gene_count": "5009",
        "non_coding_gene_count": "174",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-19",
    "dateModified": "2018-01-19",
    "datePublished": "2018-01-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vibrio harveyi"
        ],
        "sample_taxid": [
            "669"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Not Applicable",
            "Not Applicable"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: MA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.631 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5758394",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "3540268",
        "N50 (bp)": "3540268",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.0",
        "Number of CDSs": "5092",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "37",
        "Number of tRNAs": "134",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Vibrio harveyi",
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                "accession": "GCA_001471575.2",
                "taxid": 669,
                "species_taxid": 669,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1915,
                "total_fragments": 1919,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio harveyi",
                "strain": "strain=NCTC12970",
                "accession": "GCA_900460165.1",
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                "species_taxid": 669,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9768,
                "matched_fragments": 1870,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio harveyi",
                "strain": "strain=NBRC 15634",
                "accession": "GCA_001591145.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9517,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio harveyi",
                "strain": "strain=ATCC 14126",
                "accession": "GCA_001263135.1",
                "taxid": 669,
                "species_taxid": 669,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8993,
                "matched_fragments": 1727,
                "total_fragments": 1919,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio owensii",
                "strain": "strain=DY05",
                "accession": "GCA_000817815.1",
                "taxid": 696485,
                "species_taxid": 696485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2839,
                "matched_fragments": 1491,
                "total_fragments": 1919,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio campbellii",
                "strain": "strain=CAIM 519",
                "accession": "GCA_000334195.1",
                "taxid": 680,
                "species_taxid": 680,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.0531,
                "matched_fragments": 1297,
                "total_fragments": 1919,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio rotiferianus",
                "strain": "strain=CAIM 577",
                "accession": "GCA_002741985.1",
                "taxid": 190895,
                "species_taxid": 190895,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6344,
                "matched_fragments": 1288,
                "total_fragments": 1919,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio natriegens",
                "strain": "strain=14048",
                "accession": "GCA_024508015.1",
                "taxid": 691,
                "species_taxid": 691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6657,
                "matched_fragments": 855,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio pelagius",
                "strain": "strain=ATCC 25916",
                "accession": "GCA_024347575.1",
                "taxid": 28169,
                "species_taxid": 28169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9535,
                "matched_fragments": 526,
                "total_fragments": 1919,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio fortis",
                "strain": "strain=LMG 21557",
                "accession": "GCA_024347475.1",
                "taxid": 212667,
                "species_taxid": 212667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8524,
                "matched_fragments": 561,
                "total_fragments": 1919,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=JCM 19500",
                "accession": "GCA_009938205.1",
                "taxid": 1381081,
                "species_taxid": 1381081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6718,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=LBS 2",
                "accession": "GCA_008830195.1",
                "taxid": 1381081,
                "species_taxid": 1381081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3983,
                "matched_fragments": 461,
                "total_fragments": 1919,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_001591145.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.53",
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            {
                "accession": "GCF_000817815.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_002163755.1",
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                "matched_fragments": 1376,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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                "mean_intra_species_ani": "96.60",
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                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 78,
                "status": "-"
            },
            {
                "accession": "GCF_002741985.1",
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                "min_intra_species_af": "0.85",
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                "status": "-"
            },
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                "accession": "GCF_000400365.1",
                "gtdb_species": "s__Vibrio jasicida",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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            },
            {
                "accession": "GCF_002906655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCF_000171815.1",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_000354175.2",
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            {
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                "num_clustered_genomes": 1553,
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            },
            {
                "accession": "GCA_001048675.1",
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                "num_clustered_genomes": 43,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
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        "doubling_h": -0.527,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "harveyi"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}