{
    "type": "genome",
    "identifier": "GCF_001482675.1",
    "organism": "Nocardia jinanensis NBRC 108249",
    "title": "Nocardia jinanensis NBRC 108249",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanyang Technological University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001482675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04120645",
        "wgs_master": "LNDA00000000.1",
        "refseq_category": "na",
        "taxid": "1210082",
        "species_taxid": "382504",
        "organism_name": "Nocardia jinanensis NBRC 108249",
        "infraspecific_name": "strain=NBRC 108249",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/12/24",
        "asm_name": "ASM148267v1",
        "asm_submitter": "Nanyang Technological University",
        "gbrs_paired_asm": "GCA_001482675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/482/675/GCF_001482675.1_ASM148267v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5039245",
        "genome_size_ungapped": "5036717",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "107",
        "contig_count": "107",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-16",
        "total_gene_count": "4683",
        "protein_coding_gene_count": "4441",
        "non_coding_gene_count": "38",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-12-24",
    "dateModified": "2015-12-24",
    "datePublished": "2015-12-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia jinanensis NBRC 108249"
        ],
        "sample_taxid": [
            "1210082"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.386 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 43.06,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5039245",
        "Number of Sequences": "107",
        "Longest Sequences (bp)": "359073",
        "N50 (bp)": "94549",
        "Gap Ratio (%)": "0.058402",
        "GCcontent (%)": "67.4",
        "Number of CDSs": "4601",
        "Average Protein Length": "307.8",
        "Coding Ratio (%)": "84.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nocardia jinanensis",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1631,
                "total_fragments": 1633,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia jinanensis",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_000720425.1",
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                "status": "below_threshold"
            },
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                "organism_name": "Nocardia rhamnosiphila",
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                "species_taxid": 426716,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia rhamnosiphila",
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                "relation_to_type": "type",
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                "ani": 87.1429,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia testacea",
                "strain": "strain=NBRC 100365",
                "accession": "GCA_000308775.1",
                "taxid": 248551,
                "species_taxid": 248551,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1142,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia sienata",
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                "accession": "GCA_001613205.1",
                "taxid": 248552,
                "species_taxid": 248552,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7873,
                "matched_fragments": 1180,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia grenadensis",
                "strain": "strain=NBRC 108939",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia flavorosea",
                "strain": "strain=JCM 3332",
                "accession": "GCA_012396035.1",
                "taxid": 53429,
                "species_taxid": 53429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7481,
                "matched_fragments": 973,
                "total_fragments": 1633,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_014645735.1",
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                "ani_circumscription_radius": 95.0,
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            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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            },
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "jinanensis",
        "NBRC",
        "108249"
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    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}