{ "type": "genome", "identifier": "GCF_001484765.1", "organism": "Entomohabitans teleogrylli", "title": "Entomohabitans teleogrylli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001484765.1", "bioproject": "PRJNA224116", "biosample": "SAMN04202767", "wgs_master": "LLXO00000000.1", "refseq_category": "reference genome", "taxid": "1384589", "species_taxid": "1384589", "organism_name": "Entomohabitans teleogrylli", "infraspecific_name": "strain=SCU-B244", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/04", "asm_name": "ASM148476v1", "asm_submitter": "Sichuan University", "gbrs_paired_asm": "GCA_001484765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/484/765/GCF_001484765.1_ASM148476v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5453996", "genome_size_ungapped": "5453827", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "132", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001484765.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5226", "protein_coding_gene_count": "5016", "non_coding_gene_count": "89", "pubmed_id": "26800121" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-04", "dateModified": "2016-01-04", "datePublished": "2016-01-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Entomohabitans teleogrylli" ], "sample_taxid": [ "1384589" ], "sample_host_organism": [ "cricket" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chengdu" ], "sample_host_location_id": [], "data_size": "1.545 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5453996", "Number of Sequences": "115", "Longest Sequences (bp)": "708774", "N50 (bp)": "298088", "Gap Ratio (%)": "0.003099", "GCcontent (%)": "55.3", "Number of CDSs": "5085", "Average Protein Length": "306.9", "Coding Ratio (%)": "85.8", "Number of rRNAs": "1", "Number of tRNAs": "73", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella quasipneumoniae", "strain": "strain=DSM 28211", "accession": "GCA_020115515.1", "taxid": 1463165, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 80.3146, "matched_fragments": 731, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae", "strain": "strain=FDAARGOS_1503", "accession": "GCA_020099175.1", "taxid": 1463165, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 80.3032, "matched_fragments": 736, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "strain": "strain=01A030T", "accession": "GCA_020525925.1", "taxid": 1667327, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 80.255, "matched_fragments": 735, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "strain": "strain=01A030", "accession": "GCA_000751755.1", "taxid": 1667327, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 80.2437, "matched_fragments": 737, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000409325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 80.2097, "matched_fragments": 666, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. lausannensis", "strain": "strain=LMG 23824", "accession": "GCA_000409365.1", "taxid": 413500, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 80.0633, "matched_fragments": 690, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "strain": "strain=07A044T", "accession": "GCA_020525685.1", "taxid": 1463164, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 80.0542, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_000982825.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 79.9119, "matched_fragments": 685, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 79.9059, "matched_fragments": 715, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000742135.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 79.9024, "matched_fragments": 712, "total_fragments": 1775, "ani_threshold": 95, "status": "below_threshold" }, { 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1775, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001484765.1", "gtdb_species": "s__Erwinia_A teleogrylli", "ani": 100.0, "matched_fragments": 1772, "total_fragments": 1775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000751755.1", "gtdb_species": "s__Klebsiella quasipneumoniae", "ani": 80.2748, "matched_fragments": 733, "total_fragments": 1775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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