{ "type": "genome", "identifier": "GCF_001507315.1", "organism": "Micromonospora maris", "title": "Micromonospora maris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois at Urbana-Champaign", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001507315.1", "bioproject": "PRJNA224116", "biosample": "SAMN03327480", "wgs_master": "LMWI00000000.1", "refseq_category": "na", "taxid": "1003110", "species_taxid": "1003110", "organism_name": "Micromonospora maris", "infraspecific_name": "strain=NRRL B-24793", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/07", "asm_name": "ASM150731v1", "asm_submitter": "University of Illinois at Urbana-Champaign", "gbrs_paired_asm": "GCA_001507315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/507/315/GCF_001507315.1_ASM150731v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6673947", "genome_size_ungapped": "6673947", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-17", "total_gene_count": "6029", "protein_coding_gene_count": "5859", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-07", "dateModified": "2016-01-07", "datePublished": "2016-01-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora maris" ], "sample_taxid": [ "1003110" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Sea of Japan" ], "sample_host_location_id": [], "data_size": "1.783 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6673947", "Number of Sequences": "2", "Longest Sequences (bp)": "4308966", "N50 (bp)": "4308966", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "6081", "Average Protein Length": "329.0", "Coding Ratio (%)": "89.9", "Number of rRNAs": "9", "Number of tRNAs": "61", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora maris", "strain": "strain=NRRL B-24793", "accession": "GCA_001507315.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2224, "total_fragments": 2224, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora maris", "strain": "strain=AB-18-032", "accession": "GCA_000204155.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2224, "total_fragments": 2224, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora fiedleri", "strain": "strain=MG-37", "accession": "GCA_016774385.1", "taxid": 1157498, "species_taxid": 1157498, "relation_to_type": "type", "validated": true, "ani": 96.8092, "matched_fragments": 2004, "total_fragments": 2224, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora gifhornensis", "strain": "strain=NBRC 16317", "accession": "GCA_016863515.1", "taxid": 84594, "species_taxid": 84594, "relation_to_type": "type", "validated": true, "ani": 96.297, "matched_fragments": 1928, "total_fragments": 2224, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora zingiberis", "strain": "strain=PLAI 1-1", "accession": "GCA_004331455.1", "taxid": 2053011, "species_taxid": 2053011, "relation_to_type": "type", "validated": true, "ani": 89.6236, "matched_fragments": 1567, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craterilacus", "strain": "strain=NA12", "accession": "GCA_003236315.1", "taxid": 1655439, "species_taxid": 1655439, "relation_to_type": "type", "validated": true, "ani": 87.128, "matched_fragments": 1395, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 86.2885, "matched_fragments": 1510, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora tarapacensis", "strain": "strain=Llam7", "accession": "GCA_019697375.1", "taxid": 2835305, "species_taxid": 2835305, "relation_to_type": "type", "validated": true, "ani": 86.2202, "matched_fragments": 1487, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craniellae", "strain": "strain=LHW63014", "accession": "GCA_003419945.1", "taxid": 2294034, "species_taxid": 2294034, "relation_to_type": "type", "validated": true, "ani": 86.077, "matched_fragments": 1398, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 84.3181, "matched_fragments": 1005, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora nigra", "strain": 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"GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 83.1961, "matched_fragments": 1318, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora avicenniae", "strain": "strain=DSM 45758", "accession": "GCA_900156065.1", "taxid": 1198245, "species_taxid": 1198245, "relation_to_type": "type", "validated": true, "ani": 82.7797, "matched_fragments": 1197, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 76.5202, "matched_fragments": 509, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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