{
    "type": "genome",
    "identifier": "GCF_001515285.1",
    "organism": "Aquitalea magnusonii",
    "title": "Aquitalea magnusonii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Masaryk University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001515285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04275151",
        "wgs_master": "LNQU00000000.1",
        "refseq_category": "na",
        "taxid": "332411",
        "species_taxid": "332411",
        "organism_name": "Aquitalea magnusonii",
        "infraspecific_name": "strain=CCM 7607",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/15",
        "asm_name": "ASM151528v1",
        "asm_submitter": "Masaryk University",
        "gbrs_paired_asm": "GCA_001515285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/515/285/GCF_001515285.1_ASM151528v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4330398",
        "genome_size_ungapped": "4330398",
        "gc_percent": "60.500000",
        "replicon_count": "0",
        "scaffold_count": "600",
        "contig_count": "600",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001515285.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4687",
        "protein_coding_gene_count": "4302",
        "non_coding_gene_count": "73",
        "pubmed_id": "26637813"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-15",
    "dateModified": "2016-01-15",
    "datePublished": "2016-01-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aquitalea magnusonii"
        ],
        "sample_taxid": [
            "332411"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Wisconsin, trout bog"
        ],
        "sample_host_location_id": [],
        "data_size": "1.211 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.39,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4330398",
        "Number of Sequences": "600",
        "Longest Sequences (bp)": "110569",
        "N50 (bp)": "22257",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.4",
        "Number of CDSs": "4124",
        "Average Protein Length": "277.4",
        "Coding Ratio (%)": "79.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aquitalea magnusonii",
                "strain": "strain=DSM 25134",
                "accession": "GCA_003202035.1",
                "taxid": 332411,
                "species_taxid": 332411,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.8946,
                "matched_fragments": 1206,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aquitalea aquatilis",
                "strain": "strain=THG-DN7.12",
                "accession": "GCA_005155025.1",
                "taxid": 1537400,
                "species_taxid": 1537400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.0612,
                "matched_fragments": 994,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquitalea pelogenes",
                "strain": "strain=CCM 7557",
                "accession": "GCA_001515305.1",
                "taxid": 1293573,
                "species_taxid": 1293573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.7482,
                "matched_fragments": 940,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquitalea denitrificans",
                "strain": "strain=5YN1-3",
                "accession": "GCA_009856625.1",
                "taxid": 519081,
                "species_taxid": 519081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4863,
                "matched_fragments": 947,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium aquaticum",
                "strain": "strain=DSM 19852",
                "accession": "GCA_021129195.1",
                "taxid": 467180,
                "species_taxid": 467180,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0597,
                "matched_fragments": 600,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium sinusclupearum",
                "strain": "strain=MWU13-2610",
                "accession": "GCA_002902845.1",
                "taxid": 2077146,
                "species_taxid": 2077146,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.775,
                "matched_fragments": 565,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium piscinae",
                "strain": "strain=DSM 23278",
                "accession": "GCA_021129175.1",
                "taxid": 686831,
                "species_taxid": 686831,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6906,
                "matched_fragments": 555,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium paludis",
                "strain": "strain=IIBBL 257-1",
                "accession": "GCA_008275125.1",
                "taxid": 2605945,
                "species_taxid": 2605945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6238,
                "matched_fragments": 584,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium amazonense",
                "strain": "strain=DSM 26508",
                "accession": "GCA_001855565.1",
                "taxid": 1382803,
                "species_taxid": 1382803,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5601,
                "matched_fragments": 562,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium haemolyticum",
                "strain": "strain=DSM 19808",
                "accession": "GCA_000711885.1",
                "taxid": 394935,
                "species_taxid": 394935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5326,
                "matched_fragments": 587,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium alticapitis",
                "strain": "strain=MWU14-2602",
                "accession": "GCA_002924365.1",
                "taxid": 2073169,
                "species_taxid": 2073169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5224,
                "matched_fragments": 581,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus numazuensis",
                "strain": "strain=LMG 26411",
                "accession": "GCA_905397435.1",
                "taxid": 221992,
                "species_taxid": 221992,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3324,
                "matched_fragments": 170,
                "total_fragments": 1233,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.39,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003202035.1",
                "gtdb_species": "s__Aquitalea magnusonii",
                "ani": 99.8946,
                "matched_fragments": 1206,
                "total_fragments": 1233,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Aquitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "98.53",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003693445.1",
                "gtdb_species": "s__Aquitalea sp003693445",
                "ani": 92.7136,
                "matched_fragments": 974,
                "total_fragments": 1233,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Aquitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013911085.1",
                "gtdb_species": "s__Aquitalea magnusonii_C",
                "ani": 91.1147,
                "matched_fragments": 997,
                "total_fragments": 1233,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Aquitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005155025.1",
                "gtdb_species": "s__Aquitalea aquatilis",
                "ani": 91.0291,
                "matched_fragments": 996,
                "total_fragments": 1233,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Aquitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "99.19",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001515305.1",
                "gtdb_species": "s__Aquitalea pelogenes",
                "ani": 87.7702,
                "matched_fragments": 937,
                "total_fragments": 1233,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Aquitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002217795.2",
                "gtdb_species": "s__Aquitalea magnusonii_B",
                "ani": 87.6182,
                "matched_fragments": 991,
                "total_fragments": 1233,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Aquitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009856625.1",
                "gtdb_species": "s__Aquitalea denitrificans",
                "ani": 87.4976,
                "matched_fragments": 946,
                "total_fragments": 1233,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Aquitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019232735.1",
                "gtdb_species": "s__Aquitalea sp019232735",
                "ani": 85.7945,
                "matched_fragments": 500,
                "total_fragments": 1233,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Aquitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 31.0,
        "optimum_tmp": 35.0,
        "optimum_ph": 6.0,
        "genome_size": 4484997.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aquitalea",
        "magnusonii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}