{
    "type": "genome",
    "identifier": "GCF_001522135.2",
    "organism": "Burkholderia oklahomensis C6786",
    "title": "Burkholderia oklahomensis C6786",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northern Arizona University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001522135.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03449125",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "441162",
        "species_taxid": "342113",
        "organism_name": "Burkholderia oklahomensis C6786",
        "infraspecific_name": "strain=C6786",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/09/02",
        "asm_name": "ASM152213v2",
        "asm_submitter": "Northern Arizona University",
        "gbrs_paired_asm": "GCA_001522135.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/522/135/GCF_001522135.2_ASM152213v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7134792",
        "genome_size_ungapped": "7134792",
        "gc_percent": "67.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-05",
        "total_gene_count": "6391",
        "protein_coding_gene_count": "6117",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-09-02",
    "dateModified": "2016-09-02",
    "datePublished": "2016-09-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Burkholderia oklahomensis C6786"
        ],
        "sample_taxid": [
            "441162"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Oklahoma"
        ],
        "sample_host_location_id": [],
        "data_size": "1.910 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7134792",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "4131753",
        "N50 (bp)": "4131753",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.1",
        "Number of CDSs": "6183",
        "Average Protein Length": "323.6",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "12",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Burkholderia oklahomensis",
                "strain": "strain=C6786",
                "accession": "GCA_001522135.2",
                "taxid": 342113,
                "species_taxid": 342113,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2377,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Burkholderia oklahomensis",
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                "accession": "GCA_000959365.1",
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                "species_taxid": 342113,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2376,
                "total_fragments": 2378,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Burkholderia oklahomensis",
                "strain": "strain=LMG 23618",
                "accession": "GCA_900608545.1",
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                "species_taxid": 342113,
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                "status": "conclusive"
            },
            {
                "organism_name": "Burkholderia oklahomensis",
                "strain": "strain=LMG 23618",
                "accession": "GCA_902829515.1",
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                "species_taxid": 342113,
                "relation_to_type": "type",
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                "ani": 99.9852,
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                "total_fragments": 2378,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Burkholderia oklahomensis",
                "strain": "strain=C6786",
                "accession": "GCA_000170375.1",
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                "species_taxid": 342113,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8244,
                "matched_fragments": 1998,
                "total_fragments": 2378,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Burkholderia ubonensis",
                "strain": "strain=LMG 20358",
                "accession": "GCA_902833085.1",
                "taxid": 101571,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0134,
                "matched_fragments": 1496,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
                "strain": "",
                "accession": "GCA_902499185.1",
                "taxid": 101571,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0086,
                "matched_fragments": 1443,
                "total_fragments": 2378,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia anthina",
                "strain": "strain=DSM 16086",
                "accession": "GCA_016836725.1",
                "taxid": 179879,
                "species_taxid": 179879,
                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia perseverans",
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                "accession": "GCA_022870505.1",
                "taxid": 2615214,
                "species_taxid": 2615214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4887,
                "matched_fragments": 1333,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia silviterrae",
                "strain": "strain=4M-K11",
                "accession": "GCA_004353915.1",
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                "species_taxid": 2528715,
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                "ani": 81.0607,
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                "total_fragments": 2378,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        },
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                "accession": "GCF_000959365.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 15,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001524625.2",
                "gtdb_species": "s__Burkholderia sp001524625",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia",
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                "num_clustered_genomes": 11,
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            },
            {
                "accession": "GCF_001462435.1",
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            },
            {
                "accession": "GCF_000012365.1",
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                "mean_intra_species_ani": "99.58",
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            },
            {
                "accession": "GCF_000011705.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia",
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        ]
    },
    "_bac2feature": {
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        "rRNA16S_genes": 4.0,
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        "facultative_respiration": 0.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Burkholderia",
        "oklahomensis",
        "C6786"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}