{ "type": "genome", "identifier": "GCF_001528745.1", "organism": "Marinobacterium profundum", "title": "Marinobacterium profundum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Polar Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001528745.1", "bioproject": "PRJNA224116", "biosample": "SAMD00045271", "wgs_master": "BCNS00000000.1", "refseq_category": "reference genome", "taxid": "1714300", "species_taxid": "1714300", "organism_name": "Marinobacterium profundum", "infraspecific_name": "strain=PAMC 27536", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/15", "asm_name": "ASM152874v1", "asm_submitter": "Korea Polar Research Institute", "gbrs_paired_asm": "GCA_001528745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/528/745/GCF_001528745.1_ASM152874v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5637742", "genome_size_ungapped": "5637742", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "226", "contig_count": "226", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001528745.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "5078", "protein_coding_gene_count": "4920", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-15", "dateModified": "2016-01-15", "datePublished": "2016-01-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacterium profundum" ], "sample_taxid": [ "1714300" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:East Sea" ], "sample_host_location_id": [], "data_size": "1.604 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5637742", "Number of Sequences": "226", "Longest Sequences (bp)": "253785", "N50 (bp)": "61011", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "4979", "Average Protein Length": "319.8", "Coding Ratio (%)": "84.7", "Number of rRNAs": "5", "Number of tRNAs": "82", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacterium profundum", "strain": "strain=PAMC 27536", "accession": "GCA_001528745.1", "taxid": 1714300, "species_taxid": 1714300, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1770, "total_fragments": 1774, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacterium aestuarii", "strain": "strain=ST58-10", "accession": "GCA_001651805.1", "taxid": 1821621, "species_taxid": 1821621, "relation_to_type": "type", "validated": true, "ani": 90.4378, "matched_fragments": 1297, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium rhizophilum", "strain": "strain=DSM 18822", "accession": "GCA_000378045.1", "taxid": 420402, "species_taxid": 420402, "relation_to_type": "type", "validated": true, "ani": 83.123, "matched_fragments": 1034, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium nitratireducens", "strain": "strain=CGMCC 1.7286", "accession": "GCA_014645375.1", "taxid": 518897, "species_taxid": 518897, "relation_to_type": "type", "validated": true, "ani": 78.6286, "matched_fragments": 598, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium stanieri", "strain": "strain=DSM 7027", "accession": "GCA_900155945.1", "taxid": 49186, "species_taxid": 49186, "relation_to_type": "type", "validated": true, "ani": 77.8487, "matched_fragments": 230, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium alkalitolerans", "strain": "strain=AK62", "accession": "GCA_017776525.1", "taxid": 1542925, "species_taxid": 1542925, "relation_to_type": "type", "validated": true, "ani": 77.8321, "matched_fragments": 211, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 77.7795, "matched_fragments": 312, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium mangrovicola", "strain": "strain=DSM 27697", "accession": "GCA_004339595.1", "taxid": 1476959, "species_taxid": 1476959, "relation_to_type": "type", "validated": true, "ani": 77.663, "matched_fragments": 254, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium georgiense", "strain": "strain=DSM 11526", "accession": "GCA_900107855.1", "taxid": 48076, "species_taxid": 48076, "relation_to_type": "type", "validated": true, "ani": 77.6414, "matched_fragments": 192, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium litorale", "strain": "strain=DSM 23545", "accession": "GCA_000428985.1", "taxid": 404770, "species_taxid": 404770, "relation_to_type": "type", "validated": true, "ani": 77.5186, "matched_fragments": 199, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium zhoushanense", "strain": "strain=CGMCC 1.15341", "accession": "GCA_014641945.1", "taxid": 1679163, "species_taxid": 1679163, "relation_to_type": "type", "validated": true, "ani": 77.5145, "matched_fragments": 252, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 77.5119, "matched_fragments": 271, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 76.6322, "matched_fragments": 83, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.5314, "matched_fragments": 184, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.3815, "matched_fragments": 143, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas songnenensis", "strain": "strain=NEAU-ST5-5", "accession": "GCA_003696315.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 76.3772, "matched_fragments": 123, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=IPO3752", "accession": "GCA_013387005.1", "taxid": 303, "species_taxid": 303, 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