{ "type": "genome", "identifier": "GCF_001542625.1", "organism": "Streptomyces griseochromogenes", "title": "Streptomyces griseochromogenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China National Rice Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001542625.1", "bioproject": "PRJNA224116", "biosample": "SAMN04375936", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "68214", "species_taxid": "68214", "organism_name": "Streptomyces griseochromogenes", "infraspecific_name": "strain=ATCC 14511", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/05", "asm_name": "ASM154262v2", "asm_submitter": "China National Rice Research Institute", "gbrs_paired_asm": "GCA_001542625.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/542/625/GCF_001542625.1_ASM154262v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10764674", "genome_size_ungapped": "10764674", "gc_percent": "71.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "9786", "protein_coding_gene_count": "9277", "non_coding_gene_count": "96", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-05", "dateModified": "2016-07-05", "datePublished": "2016-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces griseochromogenes" ], "sample_taxid": [ "68214" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "2.893 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 85.71, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10764674", "Number of Sequences": "1", "Longest Sequences (bp)": "10764674", "N50 (bp)": "10764674", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "9896", "Average Protein Length": "317.3", "Coding Ratio (%)": "87.5", "Number of rRNAs": "18", "Number of tRNAs": "93", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces griseochromogenes", "strain": "strain=ATCC 14511", "accession": "GCA_001542625.2", 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"total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces echinatus", "strain": "strain=CECT 3313", "accession": "GCA_014203595.1", "taxid": 67293, "species_taxid": 67293, "relation_to_type": "type", "validated": true, "ani": 87.0734, "matched_fragments": 2114, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 86.9616, "matched_fragments": 1949, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces achromogenes subsp. achromogenes", "strain": "strain=NRRL B-2120", "accession": "GCA_000720835.1", "taxid": 67256, "species_taxid": 67255, "relation_to_type": "type", "validated": true, "ani": 86.6671, "matched_fragments": 1798, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis subsp. oryzicola", "strain": "strain=W18L9", "accession": "GCA_013870495.1", "taxid": 2749088, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 85.5424, "matched_fragments": 1446, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fumigatiscleroticus", "strain": "strain=JCM 3101", "accession": "GCA_014647975.1", "taxid": 66371, "species_taxid": 66371, "relation_to_type": "type", "validated": true, "ani": 84.7941, "matched_fragments": 1718, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces davaonensis", "strain": "strain=JCM 4913", "accession": "GCA_000349325.1", "taxid": 348043, "species_taxid": 348043, "relation_to_type": "type", "validated": true, "ani": 84.7011, "matched_fragments": 1885, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 84.5881, "matched_fragments": 1412, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dysideae", "strain": "strain=RV15", "accession": "GCA_001514305.1", "taxid": 909626, "species_taxid": 909626, "relation_to_type": "type", "validated": true, "ani": 84.5229, "matched_fragments": 1854, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 84.4488, "matched_fragments": 1673, "total_fragments": 3588, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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