{ "type": "genome", "identifier": "GCF_001543915.1", "organism": "Carbonactinospora thermoautotrophica", "title": "Carbonactinospora thermoautotrophica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Harvard Medical School", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001543915.1", "bioproject": "PRJNA224116", "biosample": "SAMN03328325", "wgs_master": "JYIK00000000.1", "refseq_category": "na", "taxid": "1469144", "species_taxid": "1469144", "organism_name": "Carbonactinospora thermoautotrophica", "infraspecific_name": "strain=UBT1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/01", "asm_name": "ASM154391v1", "asm_submitter": "Harvard Medical School", "gbrs_paired_asm": "GCA_001543915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/543/915/GCF_001543915.1_ASM154391v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4726535", "genome_size_ungapped": "4726535", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "1124", "contig_count": "1124", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-18", "total_gene_count": "5123", "protein_coding_gene_count": "4566", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-01", "dateModified": "2016-02-01", "datePublished": "2016-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Carbonactinospora thermoautotrophica" ], "sample_taxid": [ "1469144" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Plech valley" ], "sample_host_location_id": [], "data_size": "1.292 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4726535", "Number of Sequences": "1124", "Longest Sequences (bp)": "41624", "N50 (bp)": "7435", "Gap Ratio (%)": "0.000042", "GCcontent (%)": "70.5", "Number of CDSs": "3804", "Average Protein Length": "270.7", "Coding Ratio (%)": "65.4", "Number of rRNAs": "4", "Number of tRNAs": "56", "Number of CRISPRs": "18" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Carbonactinospora thermoautotrophica", "strain": "strain=UBT1", "accession": "GCA_001543915.1", "taxid": 1469144, "species_taxid": 1469144, "relation_to_type": "type", "validated": 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"status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 77.9785, "matched_fragments": 379, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces murinus", "strain": "strain=NRRL B-2286", "accession": "GCA_002154555.1", "taxid": 33900, "species_taxid": 33900, "relation_to_type": "type", "validated": true, "ani": 77.9772, "matched_fragments": 323, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseofuscus", "strain": "strain=NRRL B-5429", "accession": "GCA_000718315.1", "taxid": 146922, "species_taxid": 146922, "relation_to_type": "type", "validated": true, "ani": 77.6852, "matched_fragments": 369, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura hallensis", "strain": "strain=DSM 45043", "accession": "GCA_006716765.1", "taxid": 337895, "species_taxid": 337895, "relation_to_type": "type", "validated": true, "ani": 77.6751, "matched_fragments": 362, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura citrea", "strain": "strain=DSM 43461", "accession": "GCA_013409045.1", "taxid": 46158, "species_taxid": 46158, "relation_to_type": "type", "validated": true, "ani": 77.6388, "matched_fragments": 388, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium krabiense", "strain": "strain=DSM 45790", "accession": "GCA_014200435.1", "taxid": 763782, "species_taxid": 763782, "relation_to_type": "type", "validated": true, "ani": 77.6164, "matched_fragments": 391, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora corallina", "strain": "strain=NBRC 16416", "accession": "GCA_016863035.1", "taxid": 83302, "species_taxid": 83302, "relation_to_type": "type", "validated": true, "ani": 77.6115, "matched_fragments": 366, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora cellulosiformans", "strain": "strain=Gxj-6", "accession": "GCA_008728085.1", "taxid": 2614688, "species_taxid": 2614688, "relation_to_type": "type", "validated": true, "ani": 77.5818, "matched_fragments": 350, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea montanisoli", "strain": "strain=SMC 257", "accession": "GCA_013363975.1", "taxid": 2741721, "species_taxid": 2741721, "relation_to_type": "type", "validated": true, "ani": 77.5772, "matched_fragments": 377, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium pseudovulgare", "strain": "strain=JCM 3115", "accession": "GCA_014648055.1", 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