{ "type": "genome", "identifier": "GCF_001544015.1", "organism": "Limnochorda pilosa", "title": "Limnochorda pilosa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Low Temperature Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001544015.1", "bioproject": "PRJNA224116", "biosample": "SAMD00034894", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1555112", "species_taxid": "1555112", "organism_name": "Limnochorda pilosa", "infraspecific_name": "strain=HC45", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/08/21", "asm_name": "ASM154401v1", "asm_submitter": "The Institute of Low Temperature Science", "gbrs_paired_asm": "GCA_001544015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/544/015/GCF_001544015.1_ASM154401v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3817036", "genome_size_ungapped": "3817036", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001544015.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3604", "protein_coding_gene_count": "3484", "non_coding_gene_count": "59", "pubmed_id": "26743010" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-08-21", "dateModified": "2015-08-21", "datePublished": "2015-08-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Limnochorda pilosa" ], "sample_taxid": [ "1555112" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Hokkaido, Kushiro, Lake Harutori" ], "sample_host_location_id": [], "data_size": "1.034 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3817036", "Number of Sequences": "1", "Longest Sequences (bp)": "3817036", "N50 (bp)": "3817036", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "3603", "Average Protein Length": "314.3", "Coding Ratio (%)": "89.0", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnochorda pilosa", "strain": "strain=HC45", "accession": "GCA_001544015.1", "taxid": 1555112, "species_taxid": 1555112, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_900101365.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 75.2099, "matched_fragments": 62, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_001399755.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 75.1997, "matched_fragments": 63, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.1232, "matched_fragments": 71, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { 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