{ "type": "genome", "identifier": "GCF_001544075.1", "organism": "Comamonas terrae", "title": "Comamonas terrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001544075.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019660", "wgs_master": "BCNT00000000.1", "refseq_category": "reference genome", "taxid": "673548", "species_taxid": "673548", "organism_name": "Comamonas terrae", "infraspecific_name": "strain=NBRC 106524", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/15", "asm_name": "ASM154407v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001544075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/544/075/GCF_001544075.1_ASM154407v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4716713", "genome_size_ungapped": "4716713", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001544075.1-RS_2024_08_19", "annotation_date": "2024-08-19", "total_gene_count": "4378", "protein_coding_gene_count": "4285", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-15", "dateModified": "2016-01-15", "datePublished": "2016-01-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonas terrae" ], "sample_taxid": [ "673548" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.294 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4716713", "Number of Sequences": "40", "Longest Sequences (bp)": "710385", "N50 (bp)": "282127", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "4265", "Average Protein Length": "324.2", "Coding Ratio (%)": "87.9", "Number of rRNAs": "2", "Number of tRNAs": "63", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Comamonas terrae", "strain": "strain=NBRC 106524", "accession": "GCA_001544075.1", "taxid": 673548, "species_taxid": 673548, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1552, "total_fragments": 1555, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Comamonas phosphati", "strain": "strain=CGMCC 1.12294", "accession": "GCA_014637085.1", "taxid": 1211803, "species_taxid": 1211803, "relation_to_type": "type", "validated": true, "ani": 90.5013, "matched_fragments": 1036, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=NBRC 14950", "accession": "GCA_001598795.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 84.5766, "matched_fragments": 1084, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=FDAARGOS_997", "accession": "GCA_016127415.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 84.554, "matched_fragments": 1103, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=ATCC 11996", "accession": "GCA_000241525.2", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 84.1262, "matched_fragments": 1108, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=NBRC 14951", "accession": "GCA_000740035.1", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 84.1112, "matched_fragments": 1089, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=NCTC10698", "accession": "GCA_900461225.1", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 84.1079, "matched_fragments": 1117, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 83.9648, "matched_fragments": 1088, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001418295.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 83.9639, "matched_fragments": 1095, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001517325.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 83.9453, "matched_fragments": 1098, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", 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"total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia testudinis", "strain": "strain=27C", "accession": "GCA_017498525.1", "taxid": 2816950, "species_taxid": 2816950, "relation_to_type": "type", "validated": true, "ani": 79.2375, "matched_fragments": 555, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 77.4919, "matched_fragments": 310, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum pedocola", "strain": "strain=DKR-6", "accession": "GCA_016632335.1", "taxid": 2801341, "species_taxid": 2801341, "relation_to_type": "type", "validated": true, "ani": 77.032, "matched_fragments": 325, "total_fragments": 1555, "ani_threshold": 95, "status": 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