{ "type": "genome", "identifier": "GCF_001544115.1", "organism": "Enterococcus raffinosus NBRC 100492", "title": "Enterococcus raffinosus NBRC 100492", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001544115.1", "bioproject": "PRJNA224116", "biosample": "SAMD00045732", "wgs_master": "BCPU00000000.1", "refseq_category": "na", "taxid": "1218093", "species_taxid": "71452", "organism_name": "Enterococcus raffinosus NBRC 100492", "infraspecific_name": "strain=NBRC 100492", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/26", "asm_name": "ASM154411v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001544115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/544/115/GCF_001544115.1_ASM154411v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4210362", "genome_size_ungapped": "4210362", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "144", "contig_count": "144", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001544115.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4196", "protein_coding_gene_count": "4054", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-26", "dateModified": "2016-01-26", "datePublished": "2016-01-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus raffinosus NBRC 100492" ], "sample_taxid": [ "1218093" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.200 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4210362", "Number of Sequences": "144", "Longest Sequences (bp)": "225195", "N50 (bp)": "65725", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.4", "Number of CDSs": "4057", "Average Protein Length": "295.6", "Coding Ratio (%)": "85.4", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus raffinosus", "strain": "strain=NBRC 100492", "accession": "GCA_001544115.1", "taxid": 71452, "species_taxid": 71452, 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95, "status": "below_threshold" }, { "organism_name": "Enterococcus malodoratus", "strain": "strain=DSM 20681", "accession": "GCA_001886025.1", "taxid": 71451, "species_taxid": 71451, "relation_to_type": "type", "validated": true, "ani": 81.6637, "matched_fragments": 759, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus malodoratus", "strain": "strain=ATCC 43197", "accession": "GCA_000407185.1", "taxid": 71451, "species_taxid": 71451, "relation_to_type": "type", "validated": true, "ani": 81.6584, "matched_fragments": 780, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus gilvus", "strain": "strain=ATCC BAA-350", "accession": "GCA_000394615.1", "taxid": 160453, "species_taxid": 160453, "relation_to_type": "type", "validated": true, "ani": 80.8723, "matched_fragments": 638, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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