{
    "type": "genome",
    "identifier": "GCF_001544155.1",
    "organism": "Ralstonia pickettii NBRC 102503",
    "title": "Ralstonia pickettii NBRC 102503",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001544155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00045738",
        "wgs_master": "BCPW00000000.1",
        "refseq_category": "na",
        "taxid": "1218114",
        "species_taxid": "329",
        "organism_name": "Ralstonia pickettii NBRC 102503",
        "infraspecific_name": "strain=NBRC 102503",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/26",
        "asm_name": "ASM154415v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001544155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/544/155/GCF_001544155.1_ASM154415v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4733058",
        "genome_size_ungapped": "4733058",
        "gc_percent": "64.000000",
        "replicon_count": "0",
        "scaffold_count": "52",
        "contig_count": "52",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001544155.1-RS_2024_08_19",
        "annotation_date": "2024-08-19",
        "total_gene_count": "4436",
        "protein_coding_gene_count": "4328",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-26",
    "dateModified": "2016-01-26",
    "datePublished": "2016-01-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ralstonia pickettii NBRC 102503"
        ],
        "sample_taxid": [
            "1218114"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.314 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4733058",
        "Number of Sequences": "52",
        "Longest Sequences (bp)": "586080",
        "N50 (bp)": "241285",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.0",
        "Number of CDSs": "4374",
        "Average Protein Length": "319.9",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ralstonia pickettii",
                "strain": "strain=NBRC 102503",
                "accession": "GCA_001544155.1",
                "taxid": 329,
                "species_taxid": 329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1546,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ralstonia pickettii",
                "strain": "strain=ATCC 27511",
                "accession": "GCA_000743455.1",
                "taxid": 329,
                "species_taxid": 329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9983,
                "matched_fragments": 1548,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ralstonia pickettii",
                "strain": "strain=FDAARGOS_1535",
                "accession": "GCA_020341455.1",
                "taxid": 329,
                "species_taxid": 329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9976,
                "matched_fragments": 1548,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ralstonia pickettii",
                "strain": "strain=NCTC11149",
                "accession": "GCA_900455835.1",
                "taxid": 329,
                "species_taxid": 329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9971,
                "matched_fragments": 1547,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ralstonia pickettii",
                "strain": "strain=K-288",
                "accession": "GCA_016466415.2",
                "taxid": 329,
                "species_taxid": 329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.993,
                "matched_fragments": 1546,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ralstonia pseudosolanacearum",
                "strain": "strain=LMG 9673",
                "accession": "GCA_919586305.1",
                "taxid": 1310165,
                "species_taxid": 1310165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6893,
                "matched_fragments": 1003,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ralstonia pseudosolanacearum",
                "strain": "strain=LMG 9673",
                "accession": "GCA_024925465.1",
                "taxid": 1310165,
                "species_taxid": 1310165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6435,
                "matched_fragments": 1037,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
                "strain": "strain=LMG 20358",
                "accession": "GCA_902833085.1",
                "taxid": 101571,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3653,
                "matched_fragments": 533,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
                "strain": "",
                "accession": "GCA_902499185.1",
                "taxid": 101571,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3142,
                "matched_fragments": 529,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia azotifigens",
                "strain": "strain=NF 2-5-3",
                "accession": "GCA_007995085.1",
                "taxid": 2057004,
                "species_taxid": 2057004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9098,
                "matched_fragments": 473,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016466415.1",
                "gtdb_species": "s__Ralstonia pickettii",
                "ani": 99.993,
                "matched_fragments": 1546,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 44,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000020205.1",
                "gtdb_species": "s__Ralstonia pickettii_B",
                "ani": 94.2552,
                "matched_fragments": 1363,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "96.31",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCF_000620465.1",
                "gtdb_species": "s__Ralstonia sp000620465",
                "ani": 92.8575,
                "matched_fragments": 1354,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.59",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007997035.1",
                "gtdb_species": "s__Ralstonia sp007997035",
                "ani": 92.2339,
                "matched_fragments": 1270,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900115545.1",
                "gtdb_species": "s__Ralstonia sp900115545",
                "ani": 91.6163,
                "matched_fragments": 1357,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000607165.1",
                "gtdb_species": "s__Ralstonia pickettii_A",
                "ani": 91.431,
                "matched_fragments": 1370,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000955795.1",
                "gtdb_species": "s__Ralstonia sp000955795",
                "ani": 91.2714,
                "matched_fragments": 1354,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000801955.1",
                "gtdb_species": "s__Ralstonia sp000801955",
                "ani": 87.0588,
                "matched_fragments": 1243,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.176,
        "doubling_h": 0.0,
        "growth_tmp": 30.5,
        "optimum_tmp": 34.667,
        "optimum_ph": 6.8,
        "genome_size": 5678011.905,
        "gc_content": 62.929,
        "coding_genes": 5574.875,
        "rRNA16S_genes": 2.75,
        "tRNA_genes": 56.8,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Ralstonia",
        "pickettii",
        "NBRC",
        "102503"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}