{
    "type": "genome",
    "identifier": "GCF_001544255.1",
    "organism": "Enterococcus faecium NBRC 100486",
    "title": "Enterococcus faecium NBRC 100486",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001544255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00045730",
        "wgs_master": "BCQD00000000.1",
        "refseq_category": "na",
        "taxid": "1218090",
        "species_taxid": "1352",
        "organism_name": "Enterococcus faecium NBRC 100486",
        "infraspecific_name": "strain=NBRC 100486",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/28",
        "asm_name": "ASM154425v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001544255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/544/255/GCF_001544255.1_ASM154425v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2484851",
        "genome_size_ungapped": "2484851",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "38",
        "contig_count": "38",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001544255.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "2435",
        "protein_coding_gene_count": "2318",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-28",
    "dateModified": "2016-01-28",
    "datePublished": "2016-01-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Enterococcus faecium NBRC 100486"
        ],
        "sample_taxid": [
            "1218090"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.703 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2484851",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "386577",
        "N50 (bp)": "191690",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.1",
        "Number of CDSs": "2354",
        "Average Protein Length": "298.4",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Enterococcus faecium",
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                "accession": "GCA_001544255.1",
                "taxid": 1352,
                "species_taxid": 1352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "species_taxid": 1352,
                "relation_to_type": "type",
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                "matched_fragments": 808,
                "total_fragments": 809,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Enterococcus lactis",
                "strain": "strain=LMG 25958",
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                "species_taxid": 357441,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus lactis",
                "strain": "strain=CCM 8412",
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                "validated": true,
                "ani": 94.5164,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus durans",
                "strain": "strain=NBRC 100479",
                "accession": "GCA_001544215.1",
                "taxid": 53345,
                "species_taxid": 53345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4266,
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                "total_fragments": 809,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus hirae",
                "strain": "strain=ATCC 9790",
                "accession": "GCA_000407425.1",
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                "species_taxid": 1354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2113,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus hirae",
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                "species_taxid": 1354,
                "relation_to_type": "type",
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                "ani": 80.1414,
                "matched_fragments": 376,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus villorum",
                "strain": "strain=NBRC 100699",
                "accession": "GCA_007990225.1",
                "taxid": 112904,
                "species_taxid": 112904,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus mundtii",
                "strain": "strain=DSM 4838",
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                "species_taxid": 53346,
                "relation_to_type": "type",
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                "ani": 79.5536,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus alishanensis",
                "strain": "strain=ALS3",
                "accession": "GCA_019218635.1",
                "taxid": 1303817,
                "species_taxid": 1303817,
                "relation_to_type": "type",
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                "ani": 77.7673,
                "matched_fragments": 96,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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                "accession": "GCF_001544255.1",
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                "mean_intra_species_ani": "N/A",
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "faecium",
        "NBRC",
        "100486"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}