{ "type": "genome", "identifier": "GCF_001548155.2", "organism": "Blastochloris viridis", "title": "Blastochloris viridis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tokyo Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001548155.2", "bioproject": "PRJNA224116", "biosample": "SAMD00029041", "wgs_master": "na", "refseq_category": "na", "taxid": "1079", "species_taxid": "1079", "organism_name": "Blastochloris viridis", "infraspecific_name": "strain=DSM 133", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Minor", "genome_rep": "Full", "seq_rel_date": "2016/02/24", "asm_name": "BV133_assembly_1.0", "asm_submitter": "Tokyo Institute of Technology", "gbrs_paired_asm": "GCA_001548155.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/548/155/GCF_001548155.2_BV133_assembly_1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3726627", "genome_size_ungapped": "3726627", "gc_percent": "68.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001548155.2-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "3330", "protein_coding_gene_count": "3225", "non_coding_gene_count": "61", "pubmed_id": "26337894" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-24", "dateModified": "2016-02-24", "datePublished": "2016-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Blastochloris viridis" ], "sample_taxid": [ "1079" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Dreisam River" ], "sample_host_location_id": [], "data_size": "1.008 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3726627", "Number of Sequences": "1", "Longest Sequences (bp)": "3726627", "N50 (bp)": "3726627", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.9", "Number of CDSs": "3294", "Average Protein Length": "321.1", "Coding Ratio (%)": "85.1", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastochloris viridis", "strain": "strain=DSM 133", "accession": "GCA_001548155.2", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1240, "total_fragments": 1242, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blastochloris viridis", "strain": "strain=ATCC 19567", "accession": "GCA_001402875.1", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 99.9958, "matched_fragments": 1236, "total_fragments": 1242, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 85.1288, "matched_fragments": 843, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 84.7448, "matched_fragments": 844, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_003258805.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 78.4615, "matched_fragments": 477, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 78.337, "matched_fragments": 527, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 78.2695, "matched_fragments": 448, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter tagetidis", "strain": "strain=DSM 11105", "accession": "GCA_014206845.1", "taxid": 60216, 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