{ "type": "genome", "identifier": "GCF_001550135.1", "organism": "Pseudoalteromonas shioyasakiensis", "title": "Pseudoalteromonas shioyasakiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001550135.1", "bioproject": "PRJNA224116", "biosample": "SAMN04442129", "wgs_master": "LRUE00000000.1", "refseq_category": "reference genome", "taxid": "1190813", "species_taxid": "1190813", "organism_name": "Pseudoalteromonas shioyasakiensis", "infraspecific_name": "strain=JCM 18891", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/05", "asm_name": "ASM155013v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_001550135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/550/135/GCF_001550135.1_ASM155013v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4807552", "genome_size_ungapped": "4806674", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001550135.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4369", "protein_coding_gene_count": "4257", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-05", "dateModified": "2016-02-05", "datePublished": "2016-02-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas shioyasakiensis" ], "sample_taxid": [ "1190813" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Shioyasaki offshore" ], "sample_host_location_id": [], "data_size": "1.362 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4807552", "Number of Sequences": "25", "Longest Sequences (bp)": "818136", "N50 (bp)": "361159", "Gap Ratio (%)": "0.018429", "GCcontent (%)": "41.3", "Number of CDSs": "4308", "Average Protein Length": "333.1", "Coding Ratio (%)": "89.5", "Number of rRNAs": "8", "Number of tRNAs": "74", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas shioyasakiensis", "strain": "strain=JCM 18891", "accession": "GCA_001550135.1", "taxid": 1190813, "species_taxid": 1190813, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1586, "total_fragments": 1591, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas gelatinilytica", "strain": "strain=NH153", "accession": "GCA_001641615.1", "taxid": 1703256, "species_taxid": 1703256, "relation_to_type": "type", "validated": true, "ani": 93.9137, "matched_fragments": 1409, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas profundi", "strain": "strain=CGMCC 1.15394", "accession": "GCA_014642695.1", "taxid": 1774956, "species_taxid": 1774956, "relation_to_type": "type", "validated": true, "ani": 93.5745, "matched_fragments": 1360, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas arabiensis", "strain": "strain=JCM 17292", "accession": "GCA_001550155.1", "taxid": 874454, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001306915.1", "gtdb_species": "s__Pseudoalteromonas lipolytica_A", "ani": 93.8521, "matched_fragments": 1273, "total_fragments": 1591, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.241, "cell_length": 0.166, "doubling_h": 0.348, "growth_tmp": 24.342, "optimum_tmp": 24.901, "optimum_ph": 7.588, "genome_size": 5297878.5, "gc_content": 41.108, "coding_genes": 3972.54, "rRNA16S_genes": 8.705, "tRNA_genes": 104.429, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.941, 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