{ "type": "genome", "identifier": "GCF_001552155.1", "organism": "Actinomadura formosensis NBRC 14204", "title": "Actinomadura formosensis NBRC 14204", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001552155.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046511", "wgs_master": "BCQQ00000000.1", "refseq_category": "na", "taxid": "1220557", "species_taxid": "60706", "organism_name": "Actinomadura formosensis NBRC 14204", "infraspecific_name": "strain=NBRC 14204", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/03", "asm_name": "ASM155215v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001552155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/155/GCF_001552155.1_ASM155215v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7079728", "genome_size_ungapped": "7079728", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "339", "contig_count": "339", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001552155.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "6803", "protein_coding_gene_count": "6589", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-03", "dateModified": "2016-02-03", "datePublished": "2016-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura formosensis NBRC 14204" ], "sample_taxid": [ "1220557" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.911 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7079728", "Number of Sequences": "339", "Longest Sequences (bp)": "135934", "N50 (bp)": "42023", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.6", "Number of CDSs": "6518", "Average Protein Length": "308.9", "Coding Ratio (%)": "85.3", "Number of rRNAs": "1", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura formosensis", "strain": "strain=NBRC 14204", "accession": "GCA_001552155.1", "taxid": 60706, "species_taxid": 60706, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=JCM 3320", "accession": "GCA_014648535.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 86.9085, "matched_fragments": 1518, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=DSM 43675", "accession": "GCA_014208105.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 86.8366, "matched_fragments": 1541, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura mexicana", "strain": "strain=DSM 44485", "accession": "GCA_900188105.1", "taxid": 134959, "species_taxid": 134959, "relation_to_type": "type", "validated": true, "ani": 86.7541, "matched_fragments": 1555, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 84.9528, "matched_fragments": 1333, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 84.7785, "matched_fragments": 1453, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 84.7061, "matched_fragments": 1548, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 83.935, "matched_fragments": 1423, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 81.6725, "matched_fragments": 1242, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 81.3297, "matched_fragments": 1224, "total_fragments": 2195, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, 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