{
    "type": "genome",
    "identifier": "GCF_001552175.1",
    "organism": "Actinomadura kijaniata NBRC 14229",
    "title": "Actinomadura kijaniata NBRC 14229",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001552175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00046512",
        "wgs_master": "BCQR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1220561",
        "species_taxid": "46161",
        "organism_name": "Actinomadura kijaniata NBRC 14229",
        "infraspecific_name": "strain=NBRC 14229",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/03",
        "asm_name": "ASM155217v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001552175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/175/GCF_001552175.1_ASM155217v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "10258935",
        "genome_size_ungapped": "10258935",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "361",
        "contig_count": "361",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001552175.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "9972",
        "protein_coding_gene_count": "9682",
        "non_coding_gene_count": "104",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-03",
    "dateModified": "2016-02-03",
    "datePublished": "2016-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomadura kijaniata NBRC 14229"
        ],
        "sample_taxid": [
            "1220561"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.728 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 4.63,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "10258935",
        "Number of Sequences": "361",
        "Longest Sequences (bp)": "147283",
        "N50 (bp)": "49355",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.2",
        "Number of CDSs": "9613",
        "Average Protein Length": "302.5",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "4",
        "Number of tRNAs": "126",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinomadura kijaniata",
                "strain": "strain=NBRC 14229",
                "accession": "GCA_001552175.1",
                "taxid": 46161,
                "species_taxid": 46161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3224,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Actinomadura namibiensis",
                "strain": "strain=DSM 44197",
                "accession": "GCA_014138665.1",
                "taxid": 182080,
                "species_taxid": 182080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.3235,
                "matched_fragments": 2849,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Actinomadura hibisca",
                "strain": "strain=NBRC 15177",
                "accession": "GCA_001552635.1",
                "taxid": 68565,
                "species_taxid": 68565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3659,
                "matched_fragments": 1852,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura macrotermitis",
                "strain": "strain=RB68",
                "accession": "GCA_009604375.1",
                "taxid": 2585200,
                "species_taxid": 2585200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1498,
                "matched_fragments": 1773,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura parmotrematis",
                "strain": "strain=PM05-2",
                "accession": "GCA_019458805.1",
                "taxid": 2864039,
                "species_taxid": 2864039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1876,
                "matched_fragments": 1596,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura rubrobrunea",
                "strain": "strain=NBRC 15275",
                "accession": "GCA_001552235.1",
                "taxid": 115335,
                "species_taxid": 115335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9337,
                "matched_fragments": 1353,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura logoneensis",
                "strain": "strain=NEAU-G17",
                "accession": "GCA_003428695.1",
                "taxid": 2293572,
                "species_taxid": 2293572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7531,
                "matched_fragments": 1308,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura violacea",
                "strain": "strain=LCR2-06",
                "accession": "GCA_017573465.1",
                "taxid": 2819934,
                "species_taxid": 2819934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5732,
                "matched_fragments": 1789,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura montaniterrae",
                "strain": "strain=CYP1-1B",
                "accession": "GCA_008923365.1",
                "taxid": 1803903,
                "species_taxid": 1803903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.537,
                "matched_fragments": 1669,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura meyerae",
                "strain": "strain=DSM 44715",
                "accession": "GCA_900188445.1",
                "taxid": 240840,
                "species_taxid": 240840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.525,
                "matched_fragments": 1599,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura rupiterrae",
                "strain": "strain=DSM 45251",
                "accession": "GCA_024172125.1",
                "taxid": 559627,
                "species_taxid": 559627,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2605,
                "matched_fragments": 1648,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura oligospora",
                "strain": "strain=ATCC 43269",
                "accession": "GCA_000518265.1",
                "taxid": 111804,
                "species_taxid": 111804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2165,
                "matched_fragments": 1612,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura roseirufa",
                "strain": "",
                "accession": "GCA_900659635.1",
                "taxid": 2094049,
                "species_taxid": 2094049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1618,
                "matched_fragments": 1411,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura graeca",
                "strain": "strain=32-07",
                "accession": "GCA_019175365.1",
                "taxid": 2750812,
                "species_taxid": 2750812,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0896,
                "matched_fragments": 1531,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura rifamycini",
                "strain": "strain=DSM 43936",
                "accession": "GCA_000425065.1",
                "taxid": 31962,
                "species_taxid": 31962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8697,
                "matched_fragments": 1608,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura spongiicola",
                "strain": "strain=LHW52907",
                "accession": "GCA_003432485.1",
                "taxid": 2303421,
                "species_taxid": 2303421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5607,
                "matched_fragments": 1321,
                "total_fragments": 3243,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 4.63,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001552175.1",
                "gtdb_species": "s__Spirillospora kijaniata",
                "ani": 100.0,
                "matched_fragments": 3224,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001552635.1",
                "gtdb_species": "s__Spirillospora hibisca",
                "ani": 84.3518,
                "matched_fragments": 1854,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009604375.1",
                "gtdb_species": "s__Spirillospora macrotermitis",
                "ani": 83.1874,
                "matched_fragments": 1765,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009793335.1",
                "gtdb_species": "s__Spirillospora sp009793335",
                "ani": 82.0161,
                "matched_fragments": 1812,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003001795.1",
                "gtdb_species": "s__Actinomadura_B viridilutea",
                "ani": 81.9355,
                "matched_fragments": 1406,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Actinomadura_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013211575.1",
                "gtdb_species": "s__Spirillospora verrucosospora",
                "ani": 81.6072,
                "matched_fragments": 1772,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.82",
                "min_intra_species_ani": "95.82",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008923365.1",
                "gtdb_species": "s__Spirillospora montaniterrae",
                "ani": 81.5643,
                "matched_fragments": 1660,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008923205.2",
                "gtdb_species": "s__Spirillospora physcomitrii",
                "ani": 81.545,
                "matched_fragments": 1592,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013409365.1",
                "gtdb_species": "s__Spirillospora luteofluorescens",
                "ani": 81.5152,
                "matched_fragments": 1648,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900188445.1",
                "gtdb_species": "s__Spirillospora meyerae",
                "ani": 81.5138,
                "matched_fragments": 1603,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900659615.1",
                "gtdb_species": "s__Spirillospora fibrosa",
                "ani": 81.4727,
                "matched_fragments": 1678,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017573545.1",
                "gtdb_species": "s__Spirillospora nitritigenes",
                "ani": 81.465,
                "matched_fragments": 1780,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.12",
                "min_intra_species_ani": "95.12",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001552195.1",
                "gtdb_species": "s__Spirillospora latina",
                "ani": 81.4122,
                "matched_fragments": 1498,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008923185.1",
                "gtdb_species": "s__Spirillospora rudentiformis",
                "ani": 81.2008,
                "matched_fragments": 1675,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000518265.1",
                "gtdb_species": "s__Spirillospora oligospora",
                "ani": 81.1883,
                "matched_fragments": 1619,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900659635.1",
                "gtdb_species": "s__Spirillospora roseirufa",
                "ani": 81.1455,
                "matched_fragments": 1412,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014648675.1",
                "gtdb_species": "s__Spirillospora livida",
                "ani": 81.1088,
                "matched_fragments": 1512,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "97.09",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000425065.1",
                "gtdb_species": "s__Spirillospora rifamycini",
                "ani": 80.8784,
                "matched_fragments": 1607,
                "total_fragments": 3243,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.301,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 27.0,
        "optimum_tmp": 32.909,
        "optimum_ph": 7.142,
        "genome_size": 6870287.667,
        "gc_content": 73.18,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.833,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.333,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Actinomadura",
        "kijaniata",
        "NBRC",
        "14229"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}