{ "type": "genome", "identifier": "GCF_001552215.1", "organism": "Actinomadura macra NBRC 14102", "title": "Actinomadura macra NBRC 14102", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001552215.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046507", "wgs_master": "BCQT00000000.1", "refseq_category": "reference genome", "taxid": "1220564", "species_taxid": "46164", "organism_name": "Actinomadura macra NBRC 14102", "infraspecific_name": "strain=NBRC 14102", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/03", "asm_name": "ASM155221v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001552215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/215/GCF_001552215.1_ASM155221v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9046351", "genome_size_ungapped": "9046351", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001552215.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "8231", "protein_coding_gene_count": "8044", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-03", "dateModified": "2016-02-03", "datePublished": "2016-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura macra NBRC 14102" ], "sample_taxid": [ "1220564" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.441 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.72, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9046351", "Number of Sequences": "56", "Longest Sequences (bp)": "976983", "N50 (bp)": "447182", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.7", "Number of CDSs": "8241", "Average Protein Length": "322.2", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "80", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura macra", "strain": "strain=NBRC 14102", "accession": "GCA_001552215.1", "taxid": 46164, "species_taxid": 46164, 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"organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 80.771, "matched_fragments": 1405, "total_fragments": 2990, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 80.6014, "matched_fragments": 1435, "total_fragments": 2990, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.72, "strain_heterogeneity": 60.0 }, "gtdb_result": [ { "accession": "GCF_001552215.1", "gtdb_species": "s__Spirillospora macra", "ani": 100.0, "matched_fragments": 2987, "total_fragments": 2990, "gtdb_taxonomy": 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