{ "type": "genome", "identifier": "GCF_001552275.1", "organism": "Amphibacillus sediminis NBRC 103570", "title": "Amphibacillus sediminis NBRC 103570", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001552275.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046315", "wgs_master": "BCQW00000000.1", "refseq_category": "reference genome", "taxid": "1220586", "species_taxid": "360185", "organism_name": "Amphibacillus sediminis NBRC 103570", "infraspecific_name": "strain=NBRC 103570", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/03", "asm_name": "ASM155227v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001552275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/275/GCF_001552275.1_ASM155227v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3447472", "genome_size_ungapped": "3447472", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001552275.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3158", "protein_coding_gene_count": "3032", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-03", "dateModified": "2016-02-03", "datePublished": "2016-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Amphibacillus sediminis NBRC 103570" ], "sample_taxid": [ "1220586" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.978 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 6.94, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3447472", "Number of Sequences": "74", "Longest Sequences (bp)": "398816", "N50 (bp)": "116850", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "3115", "Average Protein Length": "295.3", "Coding Ratio (%)": "80.1", "Number of rRNAs": "4", "Number of tRNAs": "56", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amphibacillus sediminis", "strain": "strain=NBRC 103570", "accession": "GCA_001552275.1", "taxid": 360185, "species_taxid": 360185, 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77.8756, "matched_fragments": 93, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphibacillus cookii", "strain": "strain=DSM 23721", "accession": "GCA_016908375.1", "taxid": 767787, "species_taxid": 767787, "relation_to_type": "type", "validated": true, "ani": 77.6495, "matched_fragments": 223, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphibacillus marinus", "strain": "strain=CGMCC 1.10434", "accession": "GCA_900110345.1", "taxid": 872970, "species_taxid": 872970, "relation_to_type": "type", "validated": true, "ani": 77.6012, "matched_fragments": 182, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus ryukyuensis", "strain": "strain=DSM 15140", "accession": "GCA_003315295.1", "taxid": 200904, "species_taxid": 200904, "relation_to_type": "type", "validated": true, "ani": 77.4424, "matched_fragments": 87, 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"below_threshold" }, { "organism_name": "Paraliobacillus sediminis", "strain": "strain=126C4", "accession": "GCA_003426055.1", "taxid": 1885916, "species_taxid": 1885916, "relation_to_type": "type", "validated": true, "ani": 76.5685, "matched_fragments": 62, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus boraciitolerans", "strain": "strain=JCM 21714", "accession": "GCA_000521485.1", "taxid": 307521, "species_taxid": 307521, "relation_to_type": "type", "validated": true, "ani": 76.5593, "matched_fragments": 64, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 6.94, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001552275.1", "gtdb_species": "s__Amphibacillus_B sediminis", "ani": 100.0, "matched_fragments": 1112, "total_fragments": 1113, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Amphibacillus", "sediminis", "NBRC", "103570" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }