{ "type": "genome", "identifier": "GCF_001552315.1", "organism": "Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527", "title": "Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001552315.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046518", "wgs_master": "BCQY00000000.1", "refseq_category": "reference genome", "taxid": "1303685", "species_taxid": "37916", "organism_name": "Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527", "infraspecific_name": "strain=NBRC 15527", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/03", "asm_name": "ASM155231v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001552315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/315/GCF_001552315.1_ASM155231v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7330216", "genome_size_ungapped": "7330216", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "107", "contig_count": "107", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001552315.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "7171", "protein_coding_gene_count": "6957", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-03", "dateModified": "2016-02-03", "datePublished": "2016-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527" ], "sample_taxid": [ "1303685" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.997 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7330216", "Number of Sequences": "107", "Longest Sequences (bp)": "637969", "N50 (bp)": "265869", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "7100", "Average Protein Length": "311.6", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium chlorophenolicum", "strain": "strain=NBRC 15527", 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"relation_to_type": "type", "validated": true, "ani": 80.6315, "matched_fragments": 1109, "total_fragments": 2392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lacusdiani", "strain": "strain=JXJ CY 35", "accession": "GCA_021916785.1", "taxid": 2895283, "species_taxid": 2895283, "relation_to_type": "type", "validated": true, "ani": 80.4939, "matched_fragments": 1137, "total_fragments": 2392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium dioxanotrophicus", "strain": "strain=PH-06", "accession": "GCA_002157835.1", "taxid": 482462, "species_taxid": 482462, "relation_to_type": "type", "validated": true, "ani": 80.2646, "matched_fragments": 1038, "total_fragments": 2392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium anyangense", "strain": "strain=JCM 30275", "accession": "GCA_010731855.1", "taxid": 1431246, "species_taxid": 1431246, "relation_to_type": "type", 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