{ "type": "genome", "identifier": "GCF_001552555.1", "organism": "Nocardiopsis trehalosi NBRC 14201", "title": "Nocardiopsis trehalosi NBRC 14201", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001552555.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046510", "wgs_master": "BCRK00000000.1", "refseq_category": "reference genome", "taxid": "1348638", "species_taxid": "109329", "organism_name": "Nocardiopsis trehalosi NBRC 14201", "infraspecific_name": "strain=NBRC 14201", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/06", "asm_name": "ASM155255v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001552555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/555/GCF_001552555.1_ASM155255v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6379550", "genome_size_ungapped": "6379550", "gc_percent": "75.000000", "replicon_count": "0", "scaffold_count": "369", "contig_count": "369", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001552555.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "5709", "protein_coding_gene_count": "5551", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-06", "dateModified": "2016-02-06", "datePublished": "2016-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis trehalosi NBRC 14201" ], "sample_taxid": [ "1348638" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.672 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6379550", "Number of Sequences": "369", "Longest Sequences (bp)": "121576", "N50 (bp)": "27850", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "75.2", "Number of CDSs": "5594", "Average Protein Length": "313.6", "Coding Ratio (%)": "82.5", "Number of rRNAs": "3", "Number of tRNAs": "77", "Number of CRISPRs": "25" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis mwathae", "strain": "strain=DSM 46659", "accession": "GCA_014201195.1", "taxid": 1472723, "species_taxid": 1472723, "relation_to_type": "type", "validated": true, "ani": 81.5211, "matched_fragments": 1038, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_002263495.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 81.494, "matched_fragments": 961, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_000341165.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 81.4761, "matched_fragments": 871, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 81.2893, "matched_fragments": 1036, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora alba", "strain": "strain=YIM 90003", "accession": "GCA_000826685.1", "taxid": 183763, "species_taxid": 183763, "relation_to_type": "type", "validated": true, "ani": 81.2161, "matched_fragments": 1007, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis potens", "strain": "strain=DSM 45234", "accession": "GCA_000341105.1", "taxid": 1246458, "species_taxid": 1246458, "relation_to_type": "type", "validated": true, "ani": 81.0744, "matched_fragments": 1143, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis composta", "strain": "strain=DSM 44551", "accession": "GCA_014200805.1", "taxid": 157465, "species_taxid": 157465, "relation_to_type": "type", "validated": true, "ani": 80.9982, "matched_fragments": 1195, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida cellulosilytica", "strain": "strain=TB100", "accession": "GCA_001517975.1", "taxid": 144786, "species_taxid": 144786, "relation_to_type": "type", "validated": true, "ani": 80.6174, "matched_fragments": 797, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 80.2291, "matched_fragments": 841, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 80.1099, "matched_fragments": 861, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 80.107, "matched_fragments": 928, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=YIM 90462", "accession": "GCA_001660385.1", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 80.0486, "matched_fragments": 850, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis aegyptia", "strain": "strain=DSM 44442", "accession": "GCA_013410755.1", "taxid": 220378, "species_taxid": 220378, "relation_to_type": "type", "validated": true, "ani": 79.6547, "matched_fragments": 1001, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis metallicus", "strain": "strain=DSM 44598", "accession": "GCA_014201115.1", "taxid": 179819, "species_taxid": 179819, "relation_to_type": "type", "validated": true, "ani": 79.6401, "matched_fragments": 877, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 79.6387, "matched_fragments": 868, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis listeri", "strain": "strain=NBRC 13360", "accession": "GCA_001570765.1", "taxid": 53440, "species_taxid": 53440, "relation_to_type": "type", "validated": true, "ani": 79.3492, "matched_fragments": 738, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, 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