{ "type": "genome", "identifier": "GCF_001552575.1", "organism": "Prescottella equi NBRC 101255 = C 7", "title": "Prescottella equi NBRC 101255 = C 7", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001552575.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046489", "wgs_master": "BCRL00000000.1", "refseq_category": "na", "taxid": "1219013", "species_taxid": "43767", "organism_name": "Prescottella equi NBRC 101255 = C 7", "infraspecific_name": "strain=NBRC 101255", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/06", "asm_name": "ASM155257v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001552575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/575/GCF_001552575.1_ASM155257v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5196588", "genome_size_ungapped": "5196588", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001552575.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "4938", "protein_coding_gene_count": "4820", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-06", "dateModified": "2016-02-06", "datePublished": "2016-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Prescottella equi NBRC 101255 = C 7" ], "sample_taxid": [ "1219013" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.409 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5196588", "Number of Sequences": "48", "Longest Sequences (bp)": "598553", "N50 (bp)": "251868", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.8", "Number of CDSs": "4889", "Average Protein Length": "320.8", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prescottella equi", "strain": "strain=NBRC 101255", "accession": "GCA_001552575.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1702, "total_fragments": 1707, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prescottella equi", "strain": "strain=NCTC1621", "accession": "GCA_900455845.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 99.9988, "matched_fragments": 1706, "total_fragments": 1707, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prescottella equi", "strain": "strain=C 7", "accession": "GCA_000473915.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 99.9812, "matched_fragments": 1686, "total_fragments": 1707, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prescottella equi", "strain": "strain=DSM 20307", "accession": "GCA_002094305.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 99.9796, "matched_fragments": 1695, "total_fragments": 1707, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prescottella agglutinans", "strain": "strain=CCTCC AB2014297", "accession": "GCA_004011865.1", "taxid": 1644129, "species_taxid": 1644129, "relation_to_type": "type", "validated": true, "ani": 85.9379, "matched_fragments": 1317, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella defluvii", "strain": "strain=Ca11", "accession": "GCA_000738775.1", "taxid": 1323361, "species_taxid": 1323361, "relation_to_type": "type", "validated": true, "ani": 85.2901, "matched_fragments": 1225, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus xishaensis", "strain": "strain=LHW51113", "accession": "GCA_004011825.1", "taxid": 2487364, "species_taxid": 2487364, "relation_to_type": "type", "validated": true, "ani": 82.077, "matched_fragments": 869, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001646645.1", "gtdb_species": "s__Rhodococcus hoagii", "ani": 98.7077, "matched_fragments": 1451, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.63", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.88", "num_clustered_genomes": 61, "status": "conclusive" }, { "accession": "GCF_003051005.1", "gtdb_species": "s__Rhodococcus sp003051005", "ani": 86.7079, "matched_fragments": 1396, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004011865.1", "gtdb_species": "s__Rhodococcus agglutinans", "ani": 85.9244, "matched_fragments": 1319, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000738775.1", "gtdb_species": "s__Rhodococcus defluvii", "ani": 85.2857, "matched_fragments": 1225, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005484805.1", "gtdb_species": "s__Rhodococcus sp005484805", "ani": 84.9731, "matched_fragments": 1274, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013348805.1", "gtdb_species": "s__Rhodococcus sp003350365", "ani": 84.8918, "matched_fragments": 1252, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.85", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005434945.1", "gtdb_species": "s__Rhodococcus subtropicus", "ani": 83.5295, "matched_fragments": 991, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004011835.1", "gtdb_species": "s__Rhodococcus sp004011835", "ani": 82.1899, "matched_fragments": 860, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004011825.1", "gtdb_species": "s__Rhodococcus sp004011825", "ani": 82.0611, "matched_fragments": 872, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Prescottella", "equi", "NBRC", "101255", "=", "C", "7" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }