{ "type": "genome", "identifier": "GCF_001552635.1", "organism": "Actinomadura hibisca NBRC 15177", "title": "Actinomadura hibisca NBRC 15177", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001552635.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046515", "wgs_master": "BCRO00000000.1", "refseq_category": "reference genome", "taxid": "1220559", "species_taxid": "68565", "organism_name": "Actinomadura hibisca NBRC 15177", "infraspecific_name": "strain=NBRC 15177", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/06", "asm_name": "ASM155263v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001552635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/635/GCF_001552635.1_ASM155263v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9023974", "genome_size_ungapped": "9023974", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "173", "contig_count": "173", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001552635.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "8604", "protein_coding_gene_count": "8462", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-06", "dateModified": "2016-02-06", "datePublished": "2016-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura hibisca NBRC 15177" ], "sample_taxid": [ "1220559" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.407 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 23.15, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9023974", "Number of Sequences": "173", "Longest Sequences (bp)": "368308", "N50 (bp)": "84861", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "8587", "Average Protein Length": "312.0", "Coding Ratio (%)": "89.1", "Number of rRNAs": "5", "Number of tRNAs": "91", "Number of CRISPRs": "13" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura hibisca", "strain": "strain=NBRC 15177", "accession": "GCA_001552635.1", "taxid": 68565, "species_taxid": 68565, 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84.1975, "matched_fragments": 1740, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 83.1882, "matched_fragments": 1644, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rubrisoli", "strain": "strain=H3C3", "accession": "GCA_004349215.1", "taxid": 2530368, "species_taxid": 2530368, "relation_to_type": "type", "validated": true, "ani": 82.1664, "matched_fragments": 1457, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rubrobrunea", "strain": "strain=NBRC 15275", "accession": "GCA_001552235.1", "taxid": 115335, "species_taxid": 115335, "relation_to_type": "type", "validated": true, "ani": 82.1045, "matched_fragments": 1321, 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"below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 82.0046, "matched_fragments": 1744, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura madurae", "strain": "strain=DSM 43067", "accession": "GCA_900115095.1", "taxid": 1993, "species_taxid": 1993, "relation_to_type": "type", "validated": true, "ani": 81.7776, "matched_fragments": 1562, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura roseirufa", "strain": "", "accession": "GCA_900659635.1", "taxid": 2094049, "species_taxid": 2094049, "relation_to_type": "type", "validated": true, "ani": 81.7682, "matched_fragments": 1354, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 81.7009, "matched_fragments": 1589, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 81.6586, "matched_fragments": 1466, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rifamycini", "strain": "strain=DSM 43936", "accession": "GCA_000425065.1", "taxid": 31962, "species_taxid": 31962, "relation_to_type": "type", "validated": true, "ani": 81.2798, "matched_fragments": 1516, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": 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