{
    "type": "genome",
    "identifier": "GCF_001552695.1",
    "organism": "Nocardiopsis alborubida NBRC 13392",
    "title": "Nocardiopsis alborubida NBRC 13392",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001552695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00046506",
        "wgs_master": "BCRR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1223496",
        "species_taxid": "146802",
        "organism_name": "Nocardiopsis alborubida NBRC 13392",
        "infraspecific_name": "strain=NBRC 13392",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/06",
        "asm_name": "ASM155269v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001552695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/552/695/GCF_001552695.1_ASM155269v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7177223",
        "genome_size_ungapped": "7177223",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "190",
        "contig_count": "190",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001552695.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "6375",
        "protein_coding_gene_count": "6201",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-06",
    "dateModified": "2016-02-06",
    "datePublished": "2016-02-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardiopsis alborubida NBRC 13392"
        ],
        "sample_taxid": [
            "1223496"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.932 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7177223",
        "Number of Sequences": "190",
        "Longest Sequences (bp)": "224087",
        "N50 (bp)": "65693",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.0",
        "Number of CDSs": "6358",
        "Average Protein Length": "314.7",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "79",
        "Number of CRISPRs": "14"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nocardiopsis alborubida",
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                "species_taxid": 146802,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2294,
                "total_fragments": 2301,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardiopsis alborubida",
                "strain": "strain=ATCC 23612",
                "accession": "GCA_012396365.1",
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                "species_taxid": 146802,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9863,
                "matched_fragments": 2276,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardiopsis deserti",
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                "accession": "GCA_008638355.1",
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                "species_taxid": 2605988,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardiopsis dassonvillei",
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                "accession": "GCA_012396345.1",
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                "species_taxid": 2014,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis",
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                "accession": "GCA_902825375.1",
                "taxid": 2580523,
                "species_taxid": 2014,
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                "validated": true,
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                "matched_fragments": 1520,
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                "status": "below_threshold"
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                "organism_name": "Nocardiopsis sinuspersici",
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                "accession": "GCA_001998325.1",
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                "species_taxid": 501010,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Nocardiopsis quinghaiensis",
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                "species_taxid": 464995,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardiopsis exhalans",
                "strain": "strain=JCM11759T",
                "accession": "GCA_024134545.1",
                "taxid": 163604,
                "species_taxid": 163604,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8917,
                "matched_fragments": 1362,
                "total_fragments": 2301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardiopsis kunsanensis",
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                "accession": "GCA_000340965.1",
                "taxid": 141693,
                "species_taxid": 141693,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1029,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermobifida alba",
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                "accession": "GCA_023208015.1",
                "taxid": 53522,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7958,
                "matched_fragments": 800,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermobifida halotolerans",
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                "accession": "GCA_003574835.2",
                "taxid": 483545,
                "species_taxid": 483545,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7322,
                "matched_fragments": 804,
                "total_fragments": 2301,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_012396365.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "accession": "GCF_001905145.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}