{ "type": "genome", "identifier": "GCF_001553565.1", "organism": "Actinomyces radicidentis", "title": "Actinomyces radicidentis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Forsyth Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001553565.1", "bioproject": "PRJNA224116", "biosample": "SAMN04435863", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "111015", "species_taxid": "111015", "organism_name": "Actinomyces radicidentis", "infraspecific_name": "strain=CCUG 36733", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/09", "asm_name": "ASM155356v1", "asm_submitter": "The Forsyth Institute", "gbrs_paired_asm": "GCA_001553565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/553/565/GCF_001553565.1_ASM155356v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3051613", "genome_size_ungapped": "3051613", "gc_percent": "72.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "2614", "protein_coding_gene_count": "2486", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-09", "dateModified": "2016-02-09", "datePublished": "2016-02-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomyces radicidentis" ], "sample_taxid": [ "111015" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.800 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3051613", "Number of Sequences": "1", "Longest Sequences (bp)": "3051613", "N50 (bp)": "3051613", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.6", "Number of CDSs": "2647", "Average Protein Length": "341.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "9", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomyces radicidentis", "strain": "strain=CCUG 36733", "accession": "GCA_001553565.1", "taxid": 111015, "species_taxid": 111015, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1016, "total_fragments": 1017, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinomyces haliotis", "strain": "strain=JCM 18848", "accession": "GCA_015355765.1", "taxid": 1280843, "species_taxid": 1280843, "relation_to_type": "type", "validated": true, "ani": 90.2634, "matched_fragments": 763, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces timonensis", "strain": "strain=7400942", "accession": "GCA_000295095.1", "taxid": 1288391, "species_taxid": 1288391, "relation_to_type": "type", "validated": true, "ani": 82.272, "matched_fragments": 539, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces respiraculi", "strain": "strain=ZJ750", "accession": "GCA_014595995.2", "taxid": 2744574, "species_taxid": 2744574, "relation_to_type": "type", "validated": true, "ani": 82.2425, "matched_fragments": 551, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces marmotae", "strain": "strain=zg-325", "accession": "GCA_009829655.1", "taxid": 2737173, "species_taxid": 2737173, "relation_to_type": "type", "validated": true, "ani": 81.7087, "matched_fragments": 444, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces denticolens", "strain": "strain=DSM 20671", "accession": "GCA_002072185.1", "taxid": 52767, "species_taxid": 52767, "relation_to_type": "type", "validated": true, "ani": 81.6491, "matched_fragments": 525, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces dentalis", "strain": "strain=DSM 19115", "accession": "GCA_000429225.1", "taxid": 272548, "species_taxid": 272548, "relation_to_type": "type", "validated": true, "ani": 81.5893, "matched_fragments": 601, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces 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"GCA_000711965.1", "taxid": 1659, "species_taxid": 1659, "relation_to_type": "type", "validated": true, "ani": 81.3243, "matched_fragments": 593, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces howellii", "strain": "strain=NCTC11636", "accession": "GCA_900637165.1", "taxid": 52771, "species_taxid": 52771, "relation_to_type": "type", "validated": true, "ani": 81.0957, "matched_fragments": 568, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces howellii", "strain": "strain=Sh 7/4276", "accession": "GCA_009935825.1", "taxid": 52771, "species_taxid": 52771, "relation_to_type": "type", "validated": true, "ani": 80.9832, "matched_fragments": 561, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces gerencseriae", "strain": "strain=DSM 6844", "accession": "GCA_000429265.1", "taxid": 52769, "species_taxid": 52769, 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77.0881, "matched_fragments": 245, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 76.8705, "matched_fragments": 313, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.6891, "matched_fragments": 364, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001553565.1", "gtdb_species": "s__Actinomyces radicidentis", "ani": 100.0, "matched_fragments": 1016, "total_fragments": 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