# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_135	LOCUS_01330	sequence1:149201..150466(+)	partial			WP_005483023.1	site-specific integrase	79.1	55.9	38.3
MGA_141	LOCUS_01390	sequence1:154949..156637(-)	partial			WP_010887175.1	DUF3987 domain-containing protein	73.0	47.3	27.4
MGA_142	LOCUS_01400	sequence1:156800..157828(-)	partial			WP_005483023.1	site-specific integrase	88.6	51.3	31.0
MGA_156	LOCUS_01540	sequence1:175174..176472(+)	frameshift		176466	WP_005464242.1	alanine/glycine:cation symporter family protein	99.8	83.7	95.4
MGA_157	LOCUS_01550	sequence1:176465..176728(+)	frameshift		176466	WP_005464242.1	alanine/glycine:cation symporter family protein	100.0	16.9	97.7
MGA_261	LOCUS_02580	sequence1:297398..298180(-)	frameshift		298421	WP_100069987.1	peptide chain release factor 2	100.0	71.2	99.6
MGA_490	LOCUS_04870	sequence1:544344..545741(-)	partial			WP_005462474.1	nucleoside-diphosphate sugar epimerase/dehydratase	98.5	70.6	95.2
MGA_498	LOCUS_04950	sequence1:554084..555184(-)	partial			WP_164928857.1	glycosyltransferase family 4 protein	58.7	53.1	25.5
MGA_500	LOCUS_04970	sequence1:556423..556923(-)	partial			WP_012602186.1	galactoside O-acetyltransferase	63.3	47.8	35.2
MGA_502	LOCUS_04990	sequence1:558026..559093(-)	partial			WP_010966332.1	glycosyltransferase	57.5	55.7	29.4
MGA_523	LOCUS_05200	sequence1:580303..580908(-)	partial			WP_003130183.1	sugar O-acetyltransferase	51.7	50.2	39.4
MGA_553	LOCUS_05500	sequence1:606536..607030(+)	frameshift,internal_stop_codon	607289..607291(+),607028..607030(+)	607048	WP_064240716.1	site-specific integrase	96.3	38.0	30.4
MGA_555	LOCUS_05520	sequence1:607688..608512(-)	frameshift		608592	WP_089600859.1	IS3 family transposase	99.6	71.5	69.6
MGA_562	LOCUS_05590	sequence1:614615..615304(+)	partial			WP_004080164.1	diguanylate cyclase	81.2	27.8	34.7
MGA_748	LOCUS_07430	sequence1:826693..827910(-)	frameshift		827981	WP_005461385.1	acetolactate synthase 2 catalytic subunit	100.0	73.9	99.5
MGA_749	LOCUS_07440	sequence1:827925..828341(-)	frameshift		827981	WP_005461385.1	acetolactate synthase 2 catalytic subunit	84.8	21.4	100.0
MGA_776	LOCUS_07710	sequence1:859408..859590(-)	frameshift,internal_stop_codon	859333..859335(-),859678..859680(-),859738..859740(-)	859476,859608,859834,859755,859806	WP_011072286.1	IS630-like element ISSod10 family transposase	60.0	10.6	66.7
MGA_895	LOCUS_08880	sequence1:999875..1000279(-)	partial			WP_011106108.1	hypothetical protein	32.8	36.1	93.2
MGA_905	LOCUS_08910	sequence1:1032940..1033326(-)	frameshift,internal_stop_codon	1032906..1032908(-)	1032707,1032836	WP_011072286.1	IS630-like element ISSod10 family transposase	94.5	35.5	46.3
MGA_925	LOCUS_09110	sequence1:1061470..1061925(+)	partial			WP_139685680.1	type II secretion system protein	77.5	73.4	48.8
MGA_931	LOCUS_09170	sequence1:1064558..1069075(+)	partial			WP_164925919.1	MSHA biogenesis protein MshQ	64.7	78.0	29.6
MGA_1010	LOCUS_09950	sequence1:1161333..1161692(-)	frameshift,internal_stop_codon	1161452..1161454(-)	1161506,1161430,1161735,1161708,1161582	WP_011072286.1	IS630-like element ISSod10 family transposase	30.3	10.6	66.7
MGA_1090	LOCUS_10750	sequence1:1255909..1256145(-)	partial			WP_005480056.1	hypothetical protein	100.0	62.9	96.2
MGA_1401	LOCUS_13830	sequence1:1614024..1614440(-)	internal_stop_codon	1614468..1614470(-)		WP_005456614.1	DeoR/GlpR family transcriptional regulator	100.0	52.5	99.3
MGA_1402	LOCUS_13840	sequence1:1614468..1614815(-)	internal_stop_codon	1614468..1614470(-)		WP_005456614.1	DeoR/GlpR family transcriptional regulator	100.0	43.7	100.0
MGA_1408	LOCUS_13900	sequence1:1622215..1622511(-)	partial			WP_005482297.1	YebG family protein	74.5	74.5	100.0
MGA_1428	LOCUS_14100	sequence1:1647937..1648260(+)	frameshift		1647919	WP_005488976.1	DUF4397 domain-containing protein	100.0	76.4	96.3
MGA_1576	LOCUS_15580	sequence1:1797403..1797657(-)	partial			WP_005457697.1	hypothetical protein	70.2	70.2	100.0
MGA_1611	LOCUS_15930	sequence1:1836723..1836899(-)	partial			WP_005460076.1	YkgJ family cysteine cluster protein	98.3	69.5	100.0
MGA_1647	LOCUS_16290	sequence1:1877148..1877546(-)	partial			WP_005461731.1	SDR family oxidoreductase	100.0	58.1	99.2
MGA_1691	LOCUS_16730	sequence1:1923895..1924275(-)	partial			WP_005482409.1	disulfide bond formation protein DsbB	93.7	66.3	100.0
MGA_1864	LOCUS_18460	sequence1:2127881..2129065(-)	partial			WP_005483257.1	EAL domain-containing protein	100.0	69.0	98.7
MGA_1958	LOCUS_19400	sequence1:2208592..2209680(+)	partial			WP_010957062.1	TIR domain-containing protein	47.5	42.5	28.8
MGA_1968	LOCUS_19500	sequence1:2217795..2218541(+)	partial			WP_002219437.1	KilA-N domain-containing protein	31.5	26.9	40.5
MGA_1977	LOCUS_19590	sequence1:2224588..2225838(+)	partial			WP_002296493.1	virulence-associated E family protein	42.3	35.8	31.5
MGA_1984	LOCUS_19660	sequence1:2229803..2230978(+)	partial			WP_011263106.1	phosphoethanolamine--lipid A transferase	95.1	68.6	58.1
MGA_2010	LOCUS_19920	sequence1:2251662..2251871(+)	partial			WP_155655847.1	YkgJ family cysteine cluster protein	94.2	66.3	76.9
MGA_2011	LOCUS_19930	sequence1:2252129..2252407(-)	partial			WP_088427844.1	hypothetical protein	79.3	62.9	71.2
MGA_2012	LOCUS_19940	sequence1:2252539..2252823(+)	frameshift		2252781	WP_086026417.1	IS3-like element ISVpa2 family transposase	89.4	21.9	86.9
MGA_2013	LOCUS_19950	sequence1:2252838..2253689(+)	frameshift		2252781	WP_086026417.1	IS3-like element ISVpa2 family transposase	100.0	73.9	91.2
MGA_2014	LOCUS_19960	sequence1:2253679..2253867(+)	frameshift		2253849	WP_010973888.1	pyridoxamine 5'-phosphate oxidase family protein	90.3	26.0	46.4
MGA_2163	LOCUS_21450	sequence1:2408276..2415700(+)	partial			WP_005477759.1	tandem-95 repeat protein	94.2	73.4	57.5
MGA_2329	LOCUS_23110	sequence1:2608314..2609654(-)	internal_stop_codon	2609688..2609690(-)		WP_005493834.1	DUF4150 domain-containing protein	98.4	59.8	41.4
MGA_2331	LOCUS_23130	sequence1:2610694..2613933(-)	partial			WP_005493834.1	DUF4150 domain-containing protein	38.3	57.4	53.1
MGA_2358	LOCUS_23400	sequence1:2653325..2663434(-)	frameshift		2663516	WP_103414330.1	tandem large repeat	88.9	81.5	74.7
MGA_2359	LOCUS_23410	sequence1:2663487..2665439(-)	frameshift		2663522	WP_103414330.1	tandem large repeat	96.6	17.0	83.8
MGA_2379	LOCUS_23610	sequence1:2684770..2684949(-)	partial			WP_005480751.1	M20 family peptidase	100.0	11.6	89.8
MGA_2412	LOCUS_23940	sequence1:2725026..2725574(+)	frameshift		2725553	WP_005480641.1	GntR family transcriptional regulator	97.3	79.0	97.7
MGA_2458	LOCUS_24400	sequence1:2773584..2773973(-)	partial			WP_001894072.1	translation initiation factor IF-3	100.0	70.5	82.2
MGA_2530	LOCUS_25120	sequence1:2863477..2864049(-)	frameshift		2863509	WP_005478928.1	GNAT family N-acetyltransferase	95.8	77.4	97.3
MGA_2659	LOCUS_26410	sequence1:3003684..3003881(-)	partial			WP_005495828.1	cyd operon protein YbgE	100.0	65.0	100.0
MGA_2728	LOCUS_27100	sequence1:3085176..3086024(-)	partial			WP_005481856.1	DNA internalization-related competence protein ComEC/Rec2	100.0	37.5	98.6
MGA_2805	LOCUS_27860	sequence1:3176928..3177428(-)	partial			WP_011105740.1	hypothetical protein	100.0	67.5	99.4
MGA_2958	LOCUS_29370	sequence2:51928..53754(+)	partial			WP_011460310.1	Ig-like domain-containing protein	26.5	43.4	30.5
MGA_2960	LOCUS_29390	sequence2:55914..64838(+)	partial			WP_000581724.1	toxin B	64.8	60.8	28.7
MGA_2961	LOCUS_29400	sequence2:65017..65493(-)	frameshift		65519	WP_021706804.1	IS5-like element ISVpa3 family transposase	100.0	51.6	95.6
MGA_2962	LOCUS_29410	sequence2:65484..65882(-)	frameshift		65513	WP_021706804.1	IS5-like element ISVpa3 family transposase	97.7	42.2	94.6
MGA_2967	LOCUS_29460	sequence2:74194..74334(-)	partial			WP_021706804.1	IS5-like element ISVpa3 family transposase	100.0	15.0	89.1
MGA_2968	LOCUS_29470	sequence2:74421..74810(-)	partial			WP_011969982.1	3-oxoadipyl-CoA thiolase	83.7	27.0	66.7
MGA_2972	LOCUS_29510	sequence2:77078..77536(-)	frameshift		77628	WP_005478128.1	cupin domain-containing protein	100.0	79.2	96.7
MGA_2995	LOCUS_29740	sequence2:99012..99632(+)	internal_stop_codon	99630..99632(+)		WP_000159137.1	pirin family protein	100.0	73.0	67.5
MGA_2996	LOCUS_29750	sequence2:99675..99860(+)	internal_stop_codon	99630..99632(+)		WP_000159137.1	pirin family protein	100.0	21.6	63.9
MGA_3011	LOCUS_29900	sequence2:113379..113633(+)	partial			WP_005491015.1	hypothetical protein	100.0	67.7	97.6
MGA_3118	LOCUS_30970	sequence2:234297..234482(+)	partial			WP_005488020.1	MerR family transcriptional regulator	100.0	51.7	93.4
MGA_3231	LOCUS_32100	sequence2:367687..368097(+)	internal_stop_codon	368095..368097(+)		WP_005463834.1	histidine phosphatase family protein	100.0	77.7	99.3
MGA_3277	LOCUS_32560	sequence2:428535..429293(-)	frameshift		429393	WP_005480231.1	mannose-6-phosphate isomerase, class I	100.0	62.8	95.7
MGA_3278	LOCUS_32570	sequence2:429352..429753(-)	frameshift		429393	WP_005480231.1	mannose-6-phosphate isomerase, class I	95.5	30.9	94.5
MGA_3413	LOCUS_33920	sequence2:591586..592980(+)	partial			WP_016117864.1	ATP-binding protein	86.9	72.0	27.6
MGA_3426	LOCUS_34050	sequence2:616003..616746(+)	partial			WP_015038907.1	ISL3-like element IS1001 family transposase	100.0	61.1	58.9
MGA_3427	LOCUS_34060	sequence2:617047..617352(+)	frameshift,internal_stop_codon	616830..616832(+)	616955,617342,616919	WP_086026417.1	IS3-like element ISVpa2 family transposase	97.0	25.6	91.8
MGA_3428	LOCUS_34070	sequence2:617346..617861(+)	frameshift		617340	WP_086026417.1	IS3-like element ISVpa2 family transposase	100.0	44.6	90.6
MGA_3429	LOCUS_34080	sequence2:617976..619163(-)	partial			WP_073085104.1	phospholipase D-like domain-containing protein	29.1	42.2	28.5
MGA_3433	LOCUS_34120	sequence2:622593..622967(-)	frameshift,internal_stop_codon	622592..622594(-)	622993,622549,623102	WP_010939300.1	ISL3-like element ISDvu5 family transposase	100.0	31.0	45.3
MGA_3438	LOCUS_34170	sequence2:627838..628482(-)	frameshift		628573	WP_005478461.1	beta-eliminating lyase-related protein	100.0	59.8	98.1
MGA_3439	LOCUS_34180	sequence2:628535..628915(-)	frameshift		628573	WP_005478461.1	beta-eliminating lyase-related protein	90.5	31.8	100.0
MGA_3452	LOCUS_34310	sequence2:640042..640254(-)	partial			WP_029793834.1	ABZJ_00895 family protein	100.0	46.1	94.3
MGA_3497	LOCUS_34760	sequence2:688409..689074(+)	internal_stop_codon	689072..689074(+)		WP_005481319.1	LysR family transcriptional regulator	100.0	66.6	100.0
MGA_3498	LOCUS_34770	sequence2:689126..689365(+)	internal_stop_codon	689072..689074(+)		WP_005481319.1	LysR family transcriptional regulator	100.0	23.8	86.1
MGA_3499	LOCUS_34780	sequence2:689767..690387(+)	partial			WP_005454263.1	LysR family transcriptional regulator	100.0	72.5	98.1
MGA_3690	LOCUS_36690	sequence2:913396..914277(+)	partial			WP_005461998.1	AraC family transcriptional regulator	74.1	78.9	94.5
MGA_3733	LOCUS_37120	sequence2:956725..957312(-)	partial			WP_011106281.1	endonuclease/exonuclease/phosphatase family protein	100.0	61.9	99.0
MGA_3870	LOCUS_38490	sequence2:1118258..1118446(-)	partial			WP_005464150.1	DUF134 domain-containing protein	100.0	64.6	95.2
MGA_3932	LOCUS_39110	sequence2:1184394..1184858(+)	partial			WP_005481481.1	lytic transglycosylase domain-containing protein	100.0	62.1	100.0
MGA_3983	LOCUS_39620	sequence2:1239515..1239895(+)	frameshift		1239862	WP_011963672.1	DUF6035 family protein	91.3	20.9	32.8
MGA_4067	LOCUS_40450	sequence2:1339000..1339527(-)	partial			WP_011106217.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	100.0	74.8	96.6
MGA_4165	LOCUS_41430	sequence2:1439024..1439503(-)	internal_stop_codon	1439507..1439509(-)		WP_005481731.1	ABC transporter ATP-binding protein	100.0	68.5	100.0
MGA_4166	LOCUS_41440	sequence2:1439507..1439722(-)	internal_stop_codon	1439507..1439509(-)		WP_005481731.1	ABC transporter ATP-binding protein	100.0	30.6	97.2
MGA_4186	LOCUS_41640	sequence2:1461145..1461801(+)	partial			WP_005464837.1	LysR family transcriptional regulator	100.0	71.9	98.6
MGA_4276	LOCUS_42540	sequence2:1568470..1568850(+)	partial			WP_005458394.1	glycosidase	99.2	74.4	58.4
MGA_4372	LOCUS_43500	sequence2:1673959..1674735(+)	partial			WP_005462797.1	OmpA family protein	95.0	72.1	97.6
MGA_4404	LOCUS_43820	sequence2:1708572..1708805(+)	partial			WP_005478117.1	spore coat protein U domain-containing protein	100.0	23.9	94.8
MGA_4450	LOCUS_44280	sequence2:1767067..1767231(-)	frameshift		1767512	WP_011106517.1	VWA domain-containing protein	100.0	8.7	66.7
MGA_4451	LOCUS_44290	sequence2:1767264..1768931(-)	frameshift		1767521	WP_011106517.1	VWA domain-containing protein	80.2	72.0	94.8
MGA_4517	LOCUS_44950	sequence2:1855761..1857194(-)	partial			WP_005491021.1	type III secretion system effector VopL	75.7	73.3	35.9
MGA_4518	LOCUS_44960	sequence2:1857405..1858121(+)	partial			WP_011106493.1	hypothetical protein	51.7	61.9	39.2
