{
    "type": "genome",
    "identifier": "GCF_001559775.1",
    "organism": "Streptobacillus felis",
    "title": "Streptobacillus felis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Robert Koch Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001559775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04306665",
        "wgs_master": "LOHX00000000.1",
        "refseq_category": "na",
        "taxid": "1384509",
        "species_taxid": "1384509",
        "organism_name": "Streptobacillus felis",
        "infraspecific_name": "strain=131000547",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/11",
        "asm_name": "ASM155977v1",
        "asm_submitter": "Robert Koch Institute",
        "gbrs_paired_asm": "GCA_001559775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/559/775/GCF_001559775.1_ASM155977v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1598094",
        "genome_size_ungapped": "1596211",
        "gc_percent": "26.500000",
        "replicon_count": "0",
        "scaffold_count": "349",
        "contig_count": "349",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-07",
        "total_gene_count": "1667",
        "protein_coding_gene_count": "1538",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-11",
    "dateModified": "2016-02-11",
    "datePublished": "2016-02-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptobacillus felis"
        ],
        "sample_taxid": [
            "1384509"
        ],
        "sample_host_organism": [
            "cat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.431 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1598094",
        "Number of Sequences": "349",
        "Longest Sequences (bp)": "153966",
        "N50 (bp)": "36691",
        "Gap Ratio (%)": "0.117953",
        "GCcontent (%)": "26.3",
        "Number of CDSs": "1440",
        "Average Protein Length": "309.1",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Streptobacillus felis",
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Streptobacillus canis",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptobacillus ratti",
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            },
            {
                "organism_name": "Streptobacillus moniliformis",
                "strain": "strain=DSM 12112",
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                "taxid": 34105,
                "species_taxid": 34105,
                "relation_to_type": "type",
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                "ani": 82.9903,
                "matched_fragments": 331,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sneathia sanguinegens",
                "strain": "strain=CCUG41628",
                "accession": "GCA_001517935.1",
                "taxid": 40543,
                "species_taxid": 40543,
                "relation_to_type": "type",
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                "ani": 77.3604,
                "matched_fragments": 90,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium periodonticum",
                "strain": "strain=ATCC 33693",
                "accession": "GCA_000160475.1",
                "taxid": 860,
                "species_taxid": 860,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.8481,
                "matched_fragments": 69,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium pseudoperiodonticum",
                "strain": "strain=KCOM 1259",
                "accession": "GCA_002761955.1",
                "taxid": 2663009,
                "species_taxid": 2663009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8397,
                "matched_fragments": 59,
                "total_fragments": 460,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium perfoetens",
                "strain": "strain=ATCC 29250",
                "accession": "GCA_000622245.1",
                "taxid": 852,
                "species_taxid": 852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5592,
                "matched_fragments": 68,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium senegalense",
                "strain": "strain=type strain: JC122",
                "accession": "GCA_000285575.1",
                "taxid": 1465809,
                "species_taxid": 1465809,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8269,
                "matched_fragments": 55,
                "total_fragments": 460,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001559775.1",
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                "matched_fragments": 456,
                "total_fragments": 460,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001891165.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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                "num_clustered_genomes": 25,
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            },
            {
                "accession": "GCF_001612575.1",
                "gtdb_species": "s__Streptobacillus notomytis",
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                "mean_intra_species_ani": "99.10",
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                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
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            },
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            },
            {
                "accession": "GCF_018128225.1",
                "gtdb_species": "s__Leptotrichia sp018128225",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "cell_length": 0.0,
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        "rRNA16S_genes": 5.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Streptobacillus",
        "felis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}