{ "type": "genome", "identifier": "GCF_001563495.1", "organism": "Chryseobacterium kwangjuense", "title": "Chryseobacterium kwangjuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001563495.1", "bioproject": "PRJNA224116", "biosample": "SAMN04325321", "wgs_master": "LPUR00000000.1", "refseq_category": "reference genome", "taxid": "267125", "species_taxid": "267125", "organism_name": "Chryseobacterium kwangjuense", "infraspecific_name": "strain=KJ1R5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/18", "asm_name": "ASM156349v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001563495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/563/495/GCF_001563495.1_ASM156349v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5087431", "genome_size_ungapped": "5087431", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001563495.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4608", "protein_coding_gene_count": "4506", "non_coding_gene_count": "80", "pubmed_id": "27103726" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-18", "dateModified": "2016-02-18", "datePublished": "2016-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium kwangjuense" ], "sample_taxid": [ "267125" ], "sample_host_organism": [ "Capsicum annuum (pepper)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Kwangju" ], "sample_host_location_id": [], "data_size": "1.429 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5087431", "Number of Sequences": "22", "Longest Sequences (bp)": "2133668", "N50 (bp)": "1120681", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.5", "Number of CDSs": "4453", "Average Protein Length": "330.4", "Coding Ratio (%)": "86.8", "Number of rRNAs": "7", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium kwangjuense", "strain": "strain=KJ1R5", "accession": "GCA_001563495.1", "taxid": 267125, "species_taxid": 267125, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1684, "total_fragments": 1686, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium phocaeense", "strain": "strain=6021061333", "accession": "GCA_900169075.1", "taxid": 1816690, "species_taxid": 1816690, "relation_to_type": "type", "validated": true, "ani": 93.4862, "matched_fragments": 1428, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium endalhagicum", "strain": "strain=L7", "accession": "GCA_016745235.1", "taxid": 2797638, "species_taxid": 2797638, "relation_to_type": "type", "validated": true, "ani": 86.0919, "matched_fragments": 1296, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oranimense", "strain": "strain=DSM 19055", "accession": "GCA_900129755.1", "taxid": 421058, "species_taxid": 421058, "relation_to_type": "type", "validated": true, "ani": 83.6928, "matched_fragments": 1060, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=NBRC 105250", "accession": "GCA_007991435.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 83.6158, "matched_fragments": 1046, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=KCTC 22544", "accession": "GCA_003290185.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 83.5509, "matched_fragments": 1075, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oleae", "strain": "strain=DSM 25575", "accession": "GCA_900115055.1", "taxid": 491207, "species_taxid": 491207, "relation_to_type": "type", "validated": true, "ani": 83.4754, "matched_fragments": 1214, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium elymi", "strain": "strain=KCTC 22547", "accession": "GCA_003385495.1", "taxid": 395936, "species_taxid": 395936, "relation_to_type": "type", "validated": true, "ani": 83.4254, "matched_fragments": 1052, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium angstadtii", "strain": "strain=KM", "accession": "GCA_001045465.1", "taxid": 558151, "species_taxid": 558151, "relation_to_type": "type", "validated": true, "ani": 83.295, "matched_fragments": 1160, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.157, "matched_fragments": 624, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.0449, "matched_fragments": 661, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.0076, "matched_fragments": 711, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001563495.1", "gtdb_species": "s__Chryseobacterium kwangjuense", "ani": 100.0, "matched_fragments": 1684, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900169075.1", "gtdb_species": "s__Chryseobacterium phocaeense", "ani": 93.4862, "matched_fragments": 1428, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016745235.1", "gtdb_species": "s__Chryseobacterium sp016745235", "ani": 86.0904, "matched_fragments": 1296, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014207845.1", "gtdb_species": "s__Chryseobacterium shigense_A", "ani": 83.8881, "matched_fragments": 1017, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000737715.1", "gtdb_species": "s__Chryseobacterium sp000737715", "ani": 83.7357, "matched_fragments": 1170, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129755.1", "gtdb_species": "s__Chryseobacterium oranimense", "ani": 83.6846, "matched_fragments": 1062, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001045445.1", "gtdb_species": "s__Chryseobacterium sp001045445", "ani": 83.6055, "matched_fragments": 1062, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003290185.1", "gtdb_species": "s__Chryseobacterium lathyri", "ani": 83.5564, "matched_fragments": 1075, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900115055.1", "gtdb_species": "s__Chryseobacterium oleae", "ani": 83.4881, "matched_fragments": 1212, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003385495.1", "gtdb_species": "s__Chryseobacterium elymi", "ani": 83.4151, "matched_fragments": 1054, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001045465.1", "gtdb_species": "s__Chryseobacterium angstadtii", "ani": 83.279, "matched_fragments": 1163, "total_fragments": 1686, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.243, "doubling_h": null, "growth_tmp": 28.072, "optimum_tmp": 33.0, "optimum_ph": 7.5, "genome_size": 5082720.0, "gc_content": 39.236, "coding_genes": 3717.633, "rRNA16S_genes": 4.75, "tRNA_genes": 64.066, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "kwangjuense" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }