{ "type": "genome", "identifier": "GCF_001565895.1", "organism": "Paraglaciecola hydrolytica", "title": "Paraglaciecola hydrolytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Copenhagen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001565895.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487161", "wgs_master": "LSNE00000000.1", "refseq_category": "reference genome", "taxid": "1799789", "species_taxid": "1799789", "organism_name": "Paraglaciecola hydrolytica", "infraspecific_name": "strain=S66", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/22", "asm_name": "ASM156589v1", "asm_submitter": "University of Copenhagen", "gbrs_paired_asm": "GCA_001565895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/565/895/GCF_001565895.1_ASM156589v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5221450", "genome_size_ungapped": "5206914", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001565895.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4566", "protein_coding_gene_count": "4470", "non_coding_gene_count": "58", "pubmed_id": "27103729" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-22", "dateModified": "2016-02-22", "datePublished": "2016-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraglaciecola hydrolytica" ], "sample_taxid": [ "1799789" ], "sample_host_organism": [ "Zostera sp. 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"status": "below_threshold" }, { "organism_name": "Neptunicella marina", "strain": "strain=S27-2", "accession": "GCA_014270035.1", "taxid": 2125989, "species_taxid": 2125989, "relation_to_type": "type", "validated": true, "ani": 76.8475, "matched_fragments": 125, "total_fragments": 1730, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas oceanisediminis", "strain": "strain=SM 2104", "accession": "GCA_018474025.1", "taxid": 2836180, "species_taxid": 2836180, "relation_to_type": "type", "validated": true, "ani": 76.6212, "matched_fragments": 64, "total_fragments": 1730, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=KCTC 62131", "accession": "GCA_023283695.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 75.889, "matched_fragments": 50, "total_fragments": 1730, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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