{ "type": "genome", "identifier": "GCF_001567585.1", "organism": "Micromonospora rosaria", "title": "Micromonospora rosaria", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangxi Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001567585.1", "bioproject": "PRJNA224116", "biosample": "SAMN04440589", "wgs_master": "LRQV00000000.1", "refseq_category": "reference genome", "taxid": "47874", "species_taxid": "47874", "organism_name": "Micromonospora rosaria", "infraspecific_name": "strain=DSM 803", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/24", "asm_name": "ASM156758v1", "asm_submitter": "Jiangxi Normal University", "gbrs_paired_asm": "GCA_001567585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/567/585/GCF_001567585.1_ASM156758v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7383286", "genome_size_ungapped": "7383286", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "310", "contig_count": "310", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001567585.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "6594", "protein_coding_gene_count": "6334", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-24", "dateModified": "2016-02-24", "datePublished": "2016-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora rosaria" ], "sample_taxid": [ "47874" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Little Thicket, San Jacinto County, Texas" ], "sample_host_location_id": [], "data_size": "1.955 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7383286", "Number of Sequences": "310", "Longest Sequences (bp)": "177665", "N50 (bp)": "41447", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.4", "Number of CDSs": "6335", "Average Protein Length": "327.0", "Coding Ratio (%)": "84.2", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "15" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora rosaria", "strain": "strain=DSM 803", "accession": "GCA_001567585.1", "taxid": 47874, "species_taxid": 47874, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2289, "total_fragments": 2307, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora yangpuensis", "strain": "strain=DSM 45577", "accession": "GCA_900091615.1", "taxid": 683228, "species_taxid": 683228, "relation_to_type": "type", "validated": true, "ani": 86.5886, "matched_fragments": 1467, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora yangpuensis", "strain": "strain=CGMCC 4.5736", "accession": "GCA_014645775.1", "taxid": 683228, "species_taxid": 683228, "relation_to_type": "type", "validated": true, "ani": 86.5147, "matched_fragments": 1482, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora halophytica", "strain": "strain=DSM 43171", "accession": "GCA_900090245.1", "taxid": 47864, "species_taxid": 47864, "relation_to_type": "type", "validated": true, "ani": 84.5931, "matched_fragments": 1259, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinaurantiaca", "strain": "strain=DSM 43904", "accession": "GCA_900090235.1", "taxid": 47857, "species_taxid": 47857, "relation_to_type": "type", "validated": true, "ani": 84.5833, "matched_fragments": 1320, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 84.58, "matched_fragments": 1020, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora coxensis", "strain": "strain=DSM 45161", "accession": "GCA_900090295.1", "taxid": 356852, "species_taxid": 356852, "relation_to_type": "type", "validated": true, "ani": 84.4882, "matched_fragments": 1362, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora haikouensis", "strain": "strain=DSM 45626", "accession": "GCA_900091595.1", "taxid": 686309, "species_taxid": 686309, "relation_to_type": "type", "validated": true, "ani": 84.4212, "matched_fragments": 1444, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora deserti", "strain": "strain=13K206", "accession": "GCA_003236335.1", "taxid": 2070366, "species_taxid": 2070366, "relation_to_type": "type", "validated": true, "ani": 84.2417, "matched_fragments": 1123, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.1777, "matched_fragments": 1419, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rhizosphaerae", "strain": "strain=DSM 45431", "accession": "GCA_900091465.1", "taxid": 568872, "species_taxid": 568872, "relation_to_type": "type", "validated": true, "ani": 84.1737, "matched_fragments": 1191, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora globispora", "strain": "strain=S2901", "accession": "GCA_003857015.1", "taxid": 1450148, "species_taxid": 1450148, "relation_to_type": "type", "validated": true, "ani": 84.1603, "matched_fragments": 1006, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fulviviridis", "strain": "strain=JCM 3259", "accession": "GCA_014648395.1", "taxid": 47860, "species_taxid": 47860, "relation_to_type": "type", "validated": true, "ani": 84.1591, "matched_fragments": 1301, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora olivasterospora", "strain": "strain=DSM 43868", "accession": "GCA_007830265.1", "taxid": 1880, "species_taxid": 1880, "relation_to_type": "type", "validated": true, "ani": 84.139, "matched_fragments": 1230, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 84.0992, "matched_fragments": 1294, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 84.0504, "matched_fragments": 1363, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chersina", "strain": "strain=DSM 44151", "accession": "GCA_900091475.1", "taxid": 47854, "species_taxid": 47854, "relation_to_type": "type", "validated": true, "ani": 83.923, "matched_fragments": 1298, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 83.777, "matched_fragments": 1162, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chalcea", "strain": "strain=DSM 43026", "accession": "GCA_002926165.1", "taxid": 1874, "species_taxid": 1874, "relation_to_type": "type", "validated": true, "ani": 83.6016, "matched_fragments": 1262, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.5498, "matched_fragments": 1251, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora krabiensis", "strain": "strain=DSM 45344", "accession": "GCA_900091425.1", "taxid": 307121, "species_taxid": 307121, "relation_to_type": "type", "validated": true, "ani": 83.4865, "matched_fragments": 1278, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 83.4817, "matched_fragments": 1330, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001567585.1", "gtdb_species": "s__Micromonospora rosaria", "ani": 100.0, "matched_fragments": 2289, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900091615.1", "gtdb_species": "s__Micromonospora yangpuensis", "ani": 86.5901, "matched_fragments": 1467, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003434305.1", "gtdb_species": "s__Micromonospora sp003434305", "ani": 84.6971, "matched_fragments": 1354, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900090245.1", "gtdb_species": "s__Micromonospora halophytica", "ani": 84.5815, "matched_fragments": 1260, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900090235.1", "gtdb_species": "s__Micromonospora echinaurantiaca", "ani": 84.5041, "matched_fragments": 1328, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.93", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900090295.1", "gtdb_species": "s__Micromonospora coxensis", "ani": 84.4869, "matched_fragments": 1362, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205165.1", "gtdb_species": "s__Micromonospora carbonacea", "ani": 84.4856, "matched_fragments": 1469, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.5545, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004217615.1", "gtdb_species": "s__Micromonospora kangleipakensis", "ani": 84.3994, "matched_fragments": 1266, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900091595.1", "gtdb_species": "s__Micromonospora haikouensis", "ani": 84.368, "matched_fragments": 1452, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.5545, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.42", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003236335.1", "gtdb_species": "s__Micromonospora deserti", "ani": 84.2544, "matched_fragments": 1120, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900090315.1", "gtdb_species": "s__Micromonospora citrea", "ani": 84.2013, "matched_fragments": 1336, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648395.1", "gtdb_species": "s__Micromonospora fulviviridis", "ani": 84.1883, "matched_fragments": 1298, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.01", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900091465.1", "gtdb_species": "s__Micromonospora rhizosphaerae", "ani": 84.1768, "matched_fragments": 1194, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007830265.1", "gtdb_species": "s__Micromonospora olivasterospora", "ani": 84.1601, "matched_fragments": 1228, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002210435.1", "gtdb_species": "s__Micromonospora wenchangensis", "ani": 84.1363, "matched_fragments": 1406, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.84", "min_intra_species_ani": "95.43", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003857015.1", "gtdb_species": "s__Micromonospora globispora", "ani": 84.1344, "matched_fragments": 1007, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.52", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900090265.1", "gtdb_species": "s__Micromonospora rifamycinica", "ani": 84.0767, "matched_fragments": 1358, "total_fragments": 2307, "gtdb_taxonomy": 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