{ "type": "genome", "identifier": "GCF_001570425.1", "organism": "Mycolicibacterium brisbanense", "title": "Mycolicibacterium brisbanense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001570425.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041172", "wgs_master": "BCSX00000000.1", "refseq_category": "reference genome", "taxid": "146020", "species_taxid": "146020", "organism_name": "Mycolicibacterium brisbanense", "infraspecific_name": "strain=JCM15654", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/10", "asm_name": "ASM157042v1", "asm_submitter": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "gbrs_paired_asm": "GCA_001570425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/570/425/GCF_001570425.1_ASM157042v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7387494", "genome_size_ungapped": "7387429", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001570425.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7182", "protein_coding_gene_count": "7033", "non_coding_gene_count": "60", "pubmed_id": "27231354" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-10", "dateModified": "2016-02-10", "datePublished": "2016-02-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium brisbanense" ], "sample_taxid": [ "146020" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "2.036 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7387494", "Number of Sequences": "70", "Longest Sequences (bp)": "707098", "N50 (bp)": "262033", "Gap Ratio (%)": "0.000880", "GCcontent (%)": "66.6", "Number of CDSs": "7077", "Average Protein Length": "320.7", "Coding Ratio (%)": "92.2", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium aquaticum", "strain": "strain=RW6", "accession": "GCA_002086485.1", "taxid": 1927124, "species_taxid": 1927124, 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"validated": true, "ani": 81.7196, "matched_fragments": 1284, "total_fragments": 2428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Mycobacterium] fortunisiensis", "strain": "strain=TNTM28", "accession": "GCA_019050325.1", "taxid": 2600579, "species_taxid": 2600579, "relation_to_type": "type", "validated": true, "ani": 81.6012, "matched_fragments": 1144, "total_fragments": 2428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 81.4963, "matched_fragments": 1201, "total_fragments": 2428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium peregrinum", "strain": "strain=DSM 43271", "accession": "GCA_002102345.1", "taxid": 43304, "species_taxid": 43304, "relation_to_type": "type", "validated": true, 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