{ "type": "genome", "identifier": "GCF_001570545.1", "organism": "Herbidospora mongoliensis", "title": "Herbidospora mongoliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001570545.1", "bioproject": "PRJNA224116", "biosample": "SAMD00029381", "wgs_master": "BBXD00000000.1", "refseq_category": "reference genome", "taxid": "688067", "species_taxid": "688067", "organism_name": "Herbidospora mongoliensis", "infraspecific_name": "strain=NBRC 105882", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/26", "asm_name": "ASM157054v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_001570545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/570/545/GCF_001570545.1_ASM157054v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9071752", "genome_size_ungapped": "9068089", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001570545.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "8280", "protein_coding_gene_count": "8113", "non_coding_gene_count": "78", "pubmed_id": "26452464" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-26", "dateModified": "2016-01-26", "datePublished": "2016-01-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Herbidospora mongoliensis" ], "sample_taxid": [ "688067" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.454 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9071752", "Number of Sequences": "47", "Longest Sequences (bp)": "987199", "N50 (bp)": "430095", "Gap Ratio (%)": "0.040378", "GCcontent (%)": "69.4", "Number of CDSs": "8283", "Average Protein Length": "332.8", "Coding Ratio (%)": "91.2", "Number of rRNAs": "1", "Number of tRNAs": "76", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Herbidospora mongoliensis", "strain": "strain=NBRC 105882", "accession": "GCA_001570545.1", "taxid": 688067, "species_taxid": 688067, 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"status": "below_threshold" }, { "organism_name": "Sphaerimonospora thailandensis", "strain": "strain=NBRC 107569", "accession": "GCA_016863115.1", "taxid": 795644, "species_taxid": 795644, "relation_to_type": "type", "validated": true, "ani": 79.2573, "matched_fragments": 858, "total_fragments": 3004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.0136, "matched_fragments": 1218, "total_fragments": 3004, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001570545.1", "gtdb_species": "s__Herbidospora mongoliensis", "ani": 100.0, "matched_fragments": 3000, "total_fragments": 3004, "gtdb_taxonomy": 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