{ "type": "genome", "identifier": "GCF_001570765.1", "organism": "Nocardiopsis listeri NBRC 13360", "title": "Nocardiopsis listeri NBRC 13360", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001570765.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046482", "wgs_master": "BCSH00000000.1", "refseq_category": "reference genome", "taxid": "1348637", "species_taxid": "53440", "organism_name": "Nocardiopsis listeri NBRC 13360", "infraspecific_name": "strain=NBRC 13360", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/10", "asm_name": "ASM157076v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001570765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/570/765/GCF_001570765.1_ASM157076v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5685516", "genome_size_ungapped": "5685516", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "154", "contig_count": "154", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001570765.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "5099", "protein_coding_gene_count": "4969", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-10", "dateModified": "2016-02-10", "datePublished": "2016-02-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis listeri NBRC 13360" ], "sample_taxid": [ "1348637" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.554 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5685516", "Number of Sequences": "154", "Longest Sequences (bp)": "200988", "N50 (bp)": "72724", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "5099", "Average Protein Length": "320.8", "Coding Ratio (%)": "86.3", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis listeri", "strain": "strain=NBRC 13360", "accession": "GCA_001570765.1", "taxid": 53440, "species_taxid": 53440, 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84.5084, "matched_fragments": 1368, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis terrae", "strain": "strain=DSM 45157", "accession": "GCA_014874035.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 84.4635, "matched_fragments": 1240, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 84.447, "matched_fragments": 1330, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis terrae", "strain": "strain=KCTC 19431", "accession": "GCA_014651695.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 84.3717, "matched_fragments": 1250, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis valliformis", "strain": "strain=DSM 45023", "accession": "GCA_000340985.1", "taxid": 239974, "species_taxid": 239974, "relation_to_type": "type", "validated": true, "ani": 84.3617, "matched_fragments": 1301, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis metallicus", "strain": "strain=DSM 44598", "accession": "GCA_014201115.1", "taxid": 179819, "species_taxid": 179819, "relation_to_type": "type", "validated": true, "ani": 84.3141, "matched_fragments": 1329, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis prasina", "strain": "strain=DSM 43845", "accession": "GCA_000341265.1", "taxid": 2015, "species_taxid": 2015, "relation_to_type": "type", "validated": true, "ani": 84.0699, "matched_fragments": 1204, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis halotolerans", "strain": "strain=DSM 44410", "accession": "GCA_000341065.1", "taxid": 124252, "species_taxid": 124252, "relation_to_type": "type", "validated": true, "ani": 82.8267, "matched_fragments": 1057, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 82.7598, "matched_fragments": 1149, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis aegyptia", "strain": "strain=DSM 44442", "accession": "GCA_013410755.1", "taxid": 220378, "species_taxid": 220378, "relation_to_type": "type", "validated": true, "ani": 82.274, "matched_fragments": 1136, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 81.4206, "matched_fragments": 966, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 79.0768, "matched_fragments": 640, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 79.0402, "matched_fragments": 635, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 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