{ "type": "genome", "identifier": "GCF_001570845.1", "organism": "Dietzia papillomatosis NBRC 105045", "title": "Dietzia papillomatosis NBRC 105045", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001570845.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046476", "wgs_master": "BCSL00000000.1", "refseq_category": "reference genome", "taxid": "1349764", "species_taxid": "282305", "organism_name": "Dietzia papillomatosis NBRC 105045", "infraspecific_name": "strain=NBRC 105045", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/10", "asm_name": "ASM157084v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001570845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/570/845/GCF_001570845.1_ASM157084v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3486774", "genome_size_ungapped": "3486774", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "134", "contig_count": "134", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001570845.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "3339", "protein_coding_gene_count": "3210", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-10", "dateModified": "2016-02-10", "datePublished": "2016-02-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Dietzia papillomatosis NBRC 105045" ], "sample_taxid": [ "1349764" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.943 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3486774", "Number of Sequences": "134", "Longest Sequences (bp)": "176556", "N50 (bp)": "71150", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "3228", "Average Protein Length": "321.0", "Coding Ratio (%)": "89.1", "Number of rRNAs": "1", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dietzia cinnamea", "strain": "strain=NBRC 102147", "accession": "GCA_001571065.1", "taxid": 321318, "species_taxid": 321318, "relation_to_type": "type", "validated": true, "ani": 98.1122, "matched_fragments": 986, "total_fragments": 1099, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Dietzia massiliensis", "strain": "strain=Marseille-Q0999", "accession": "GCA_018390595.1", "taxid": 2697499, "species_taxid": 2697499, "relation_to_type": "type", "validated": true, "ani": 95.4952, "matched_fragments": 932, "total_fragments": 1099, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Dietzia lutea", "strain": "strain=YIM 80766", "accession": "GCA_003096075.1", "taxid": 546160, "species_taxid": 546160, "relation_to_type": "type", "validated": true, "ani": 93.5025, "matched_fragments": 958, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia lutea", "strain": "strain=YIM 80766", "accession": "GCA_009806405.1", "taxid": 546160, "species_taxid": 546160, "relation_to_type": "type", "validated": true, "ani": 92.5716, "matched_fragments": 554, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia kunjamensis", "strain": "strain=DSM 44907", "accession": "GCA_003610395.1", "taxid": 322509, "species_taxid": 322509, "relation_to_type": "type", "validated": true, "ani": 86.291, "matched_fragments": 916, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia kunjamensis", "strain": "strain=K30-10T", "accession": "GCA_014144965.1", "taxid": 322509, "species_taxid": 322509, "relation_to_type": "type", "validated": true, "ani": 86.1946, "matched_fragments": 613, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia kunjamensis subsp. schimae", "strain": "strain=DSM 45139", "accession": "GCA_900182685.1", "taxid": 498198, "species_taxid": 322509, "relation_to_type": "type", "validated": true, "ani": 86.1532, "matched_fragments": 910, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia aerolata", "strain": "strain=Sj14aT", "accession": "GCA_014144865.1", "taxid": 595984, "species_taxid": 595984, "relation_to_type": "type", "validated": true, "ani": 82.8156, "matched_fragments": 620, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001571065.1", "gtdb_species": "s__Dietzia cinnamea", "ani": 98.1122, "matched_fragments": 986, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.1735, "mean_intra_species_ani": "97.27", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_000186325.1", "gtdb_species": "s__Dietzia cinnamea_A", "ani": 94.9308, "matched_fragments": 829, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.1735, "mean_intra_species_ani": "96.59", "min_intra_species_ani": "96.10", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003096075.1", "gtdb_species": "s__Dietzia lutea", "ani": 93.5025, "matched_fragments": 958, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014144855.1", "gtdb_species": "s__Dietzia maris", "ani": 86.2653, "matched_fragments": 578, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.49", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.74", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_008369165.1", "gtdb_species": "s__Dietzia sp008369165", "ani": 83.8129, "matched_fragments": 807, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012841845.1", "gtdb_species": "s__Dietzia sp012841845", "ani": 83.3222, "matched_fragments": 464, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014144865.1", "gtdb_species": "s__Dietzia aerolata", "ani": 82.8192, "matched_fragments": 620, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019119635.1", "gtdb_species": "s__Dietzia intestinipullorum", "ani": 81.8609, "matched_fragments": 680, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.017, "cell_length": 0.03, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 29.027, "optimum_ph": 7.333, "genome_size": 3479360.5, "gc_content": 70.87, "coding_genes": 3361.166, "rRNA16S_genes": 2.0, "tRNA_genes": 48.333, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.5, "coccus_cell_shape": 0.333, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.166, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dietzia", "papillomatosis", "NBRC", "105045" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }