{ "type": "genome", "identifier": "GCF_001570925.1", "organism": "[Zimmermannella] bifida NBRC 103089", "title": "[Zimmermannella] bifida NBRC 103089", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001570925.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046474", "wgs_master": "BCSP00000000.1", "refseq_category": "reference genome", "taxid": "1349787", "species_taxid": "272239", "organism_name": "[Zimmermannella] bifida NBRC 103089", "infraspecific_name": "strain=NBRC 103089", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/10", "asm_name": "ASM157092v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001570925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/570/925/GCF_001570925.1_ASM157092v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2127204", "genome_size_ungapped": "2127204", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001570925.1-RS_2024_08_19", "annotation_date": "2024-08-19", "total_gene_count": "1920", "protein_coding_gene_count": "1839", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-10", "dateModified": "2016-02-10", "datePublished": "2016-02-10", "_annotation": { "sample_count": 1, "sample_organism": [ "[Zimmermannella] bifida NBRC 103089" ], "sample_taxid": [ "1349787" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.596 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2127204", "Number of Sequences": "37", "Longest Sequences (bp)": "483927", "N50 (bp)": "181771", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.7", "Number of CDSs": "1858", "Average Protein Length": "333.6", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gulosibacter bifidus", "strain": "strain=NBRC 103089", "accession": "GCA_001570925.1", "taxid": 272239, "species_taxid": 272239, 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"status": "below_threshold" }, { "organism_name": "Conyzicola lurida", "strain": "strain=DSM 105784", "accession": "GCA_014204935.1", "taxid": 1172621, "species_taxid": 1172621, "relation_to_type": "type", "validated": true, "ani": 76.8931, "matched_fragments": 110, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium pusillum", "strain": "strain=ATCC 19096", "accession": "GCA_013359865.1", "taxid": 69373, "species_taxid": 69373, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8318, "matched_fragments": 93, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux flava", "strain": "strain=DSM 26474", "accession": "GCA_013409865.1", "taxid": 881268, "species_taxid": 881268, "relation_to_type": "type", "validated": true, "ani": 76.7858, "matched_fragments": 112, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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