{ "type": "genome", "identifier": "GCF_001570945.1", "organism": "Janibacter anophelis NBRC 107843", "title": "Janibacter anophelis NBRC 107843", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001570945.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046481", "wgs_master": "BCSQ00000000.1", "refseq_category": "reference genome", "taxid": "1216968", "species_taxid": "319054", "organism_name": "Janibacter anophelis NBRC 107843", "infraspecific_name": "strain=NBRC 107843", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/10", "asm_name": "ASM157094v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001570945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/570/945/GCF_001570945.1_ASM157094v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3308605", "genome_size_ungapped": "3308605", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "124", "contig_count": "124", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001570945.1-RS_2024_08_19", "annotation_date": "2024-08-19", "total_gene_count": "3327", "protein_coding_gene_count": "3224", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-10", "dateModified": "2016-02-10", "datePublished": "2016-02-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Janibacter anophelis NBRC 107843" ], "sample_taxid": [ "1216968" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.883 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3308605", "Number of Sequences": "124", "Longest Sequences (bp)": "150079", "N50 (bp)": "48575", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.3", "Number of CDSs": "3164", "Average Protein Length": "312.8", "Coding Ratio (%)": "89.7", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Janibacter anophelis", "strain": "strain=NBRC 107843", "accession": "GCA_001570945.1", "taxid": 319054, "species_taxid": 319054, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1046, "total_fragments": 1049, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_004025845.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 86.8882, "matched_fragments": 812, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_000297495.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 86.8805, "matched_fragments": 772, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter indicus", "strain": "strain=CGMCC 1.12511", "accession": "GCA_900176385.1", "taxid": 857417, "species_taxid": 857417, "relation_to_type": "type", "validated": true, "ani": 86.8714, "matched_fragments": 849, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter terrae", "strain": "strain=NBRC 107853", "accession": "GCA_001591405.1", "taxid": 103817, "species_taxid": 103817, "relation_to_type": "type", "validated": true, "ani": 86.4716, "matched_fragments": 825, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter limosus", "strain": "strain=NBRC 16128", "accession": "GCA_001570985.1", "taxid": 53458, "species_taxid": 53458, "relation_to_type": "type", "validated": true, "ani": 85.9758, "matched_fragments": 827, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 81.933, "matched_fragments": 598, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 81.8928, "matched_fragments": 648, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus piscis", "strain": "strain=DSM 22760", "accession": "GCA_022568835.1", "taxid": 673954, "species_taxid": 673954, "relation_to_type": "type", "validated": true, "ani": 78.7776, "matched_fragments": 391, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium kibberense", "strain": "strain=DSM 17687", "accession": "GCA_006519705.1", "taxid": 282060, "species_taxid": 282060, "relation_to_type": "type", "validated": true, "ani": 78.3177, "matched_fragments": 358, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 76.9491, "matched_fragments": 297, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001570945.1", "gtdb_species": "s__Janibacter anophelis", "ani": 100.0, "matched_fragments": 1046, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.19", "min_intra_species_ani": "96.19", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000297495.1", "gtdb_species": "s__Janibacter hoylei", "ani": 86.885, 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"total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.88", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004295485.1", "gtdb_species": "s__Janibacter limosus_A", "ani": 86.2272, "matched_fragments": 864, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428305.1", "gtdb_species": "s__Janibacter sp001428305", "ani": 85.9903, "matched_fragments": 853, "total_fragments": 1049, "gtdb_taxonomy": 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71.28, "coding_genes": 3156.0, "rRNA16S_genes": 2.0, "tRNA_genes": 48.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Janibacter", "anophelis", "NBRC", "107843" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }