{ "type": "genome", "identifier": "GCF_001571185.1", "organism": "Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628", "title": "Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001571185.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046731", "wgs_master": "BCTH00000000.1", "refseq_category": "na", "taxid": "1349767", "species_taxid": "55508", "organism_name": "Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628", "infraspecific_name": "strain=NBRC 102515", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/18", "asm_name": "ASM157118v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001571185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/571/185/GCF_001571185.1_ASM157118v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5883918", "genome_size_ungapped": "5883918", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "196", "contig_count": "196", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001571185.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "5247", "protein_coding_gene_count": "5106", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-18", "dateModified": "2016-02-18", "datePublished": "2016-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628" ], "sample_taxid": [ "1349767" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.633 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5883918", "Number of Sequences": "196", "Longest Sequences (bp)": "242079", "N50 (bp)": "67224", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.1", "Number of CDSs": "5019", "Average Protein Length": "338.8", "Coding Ratio (%)": "86.7", "Number of rRNAs": "2", "Number of tRNAs": "70", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Janthinobacterium agaricidamnosum", "strain": "strain=NBRC 102515", "accession": "GCA_001571185.1", 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