{ "type": "genome", "identifier": "GCF_001571265.1", "organism": "Cedecea neteri NBRC 105707 = ATCC 33855", "title": "Cedecea neteri NBRC 105707 = ATCC 33855", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001571265.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046737", "wgs_master": "BCTL00000000.1", "refseq_category": "na", "taxid": "1216978", "species_taxid": "158822", "organism_name": "Cedecea neteri NBRC 105707 = ATCC 33855", "infraspecific_name": "strain=NBRC 105707", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/18", "asm_name": "ASM157126v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001571265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/571/265/GCF_001571265.1_ASM157126v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5203266", "genome_size_ungapped": "5203266", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "139", "contig_count": "139", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001571265.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4924", "protein_coding_gene_count": "4763", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-18", "dateModified": "2016-02-18", "datePublished": "2016-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Cedecea neteri NBRC 105707 = ATCC 33855" ], "sample_taxid": [ "1216978" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.485 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5203266", "Number of Sequences": "139", "Longest Sequences (bp)": "205587", "N50 (bp)": "93533", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.1", "Number of CDSs": "4801", "Average Protein Length": "312.5", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cedecea neteri", "strain": "strain=NBRC 105707", "accession": "GCA_001571265.1", "taxid": 158822, "species_taxid": 158822, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1666, "total_fragments": 1669, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cedecea lapagei", "strain": "strain=NCTC11466", "accession": "GCA_900635955.1", "taxid": 158823, "species_taxid": 158823, "relation_to_type": "type", "validated": true, "ani": 89.0946, "matched_fragments": 1245, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cedecea davisae", "strain": "strain=DSM 4568", "accession": "GCA_000412335.2", "taxid": 158484, "species_taxid": 158484, "relation_to_type": "type", "validated": true, "ani": 86.0614, "matched_fragments": 1244, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cedecea davisae", "strain": "strain=NCTC13724", "accession": "GCA_900446735.1", "taxid": 158484, "species_taxid": 158484, "relation_to_type": "type", "validated": true, "ani": 86.0316, "matched_fragments": 1231, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella warmboldiae", "strain": "strain=CCUG 35512", "accession": "GCA_003818135.1", "taxid": 82993, "species_taxid": 82993, "relation_to_type": "type", "validated": true, "ani": 81.2816, "matched_fragments": 696, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 80.7632, "matched_fragments": 745, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 80.7251, "matched_fragments": 763, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5594, "matched_fragments": 721, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera georgiana", "strain": "strain=ATCC 51603", "accession": "GCA_001654985.1", "taxid": 73098, "species_taxid": 73098, "relation_to_type": "type", "validated": true, "ani": 80.5187, "matched_fragments": 668, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccibacter colletis", "strain": "strain=1383", "accession": "GCA_000696575.1", "taxid": 1505757, "species_taxid": 1505757, "relation_to_type": "type", "validated": true, "ani": 80.3945, "matched_fragments": 680, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 80.2971, "matched_fragments": 744, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 80.2528, "matched_fragments": 646, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera cryocrescens", "strain": "strain=NBRC 102467", "accession": "GCA_001571285.1", "taxid": 580, "species_taxid": 580, "relation_to_type": "type", "validated": true, "ani": 80.2257, "matched_fragments": 631, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia 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7966", "accession": "GCA_000014805.1", "taxid": 196023, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 76.5713, "matched_fragments": 139, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_018360025.1", "taxid": 644, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 76.571, "matched_fragments": 141, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_001999685.1", "taxid": 644, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 76.4469, "matched_fragments": 139, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001571265.1", 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