{ "type": "genome", "identifier": "GCF_001571285.1", "organism": "Kluyvera cryocrescens NBRC 102467", "title": "Kluyvera cryocrescens NBRC 102467", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001571285.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046725", "wgs_master": "BCTM00000000.1", "refseq_category": "na", "taxid": "1218112", "species_taxid": "580", "organism_name": "Kluyvera cryocrescens NBRC 102467", "infraspecific_name": "strain=NBRC 102467", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/18", "asm_name": "ASM157128v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001571285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/571/285/GCF_001571285.1_ASM157128v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5044663", "genome_size_ungapped": "5044663", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "101", "contig_count": "101", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001571285.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "4849", "protein_coding_gene_count": "4660", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-18", "dateModified": "2016-02-18", "datePublished": "2016-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Kluyvera cryocrescens NBRC 102467" ], "sample_taxid": [ "1218112" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.436 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5044663", "Number of Sequences": "101", "Longest Sequences (bp)": "405502", "N50 (bp)": "135138", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.9", "Number of CDSs": "4687", "Average Protein Length": "314.1", "Coding Ratio (%)": "87.5", "Number of rRNAs": "2", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kluyvera cryocrescens", "strain": "strain=NBRC 102467", "accession": "GCA_001571285.1", "taxid": 580, "species_taxid": 580, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1635, "total_fragments": 1636, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kluyvera intermedia", "strain": "strain=NBRC 102594", "accession": "GCA_001598315.1", "taxid": 61648, "species_taxid": 61648, "relation_to_type": "suspected-type", "validated": true, "ani": 86.1046, "matched_fragments": 1186, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera intermedia", "strain": "strain=NCTC12125", "accession": "GCA_900635475.1", "taxid": 61648, "species_taxid": 61648, "relation_to_type": "suspected-type", "validated": true, "ani": 86.0865, "matched_fragments": 1219, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 85.8335, "matched_fragments": 1230, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera ascorbata", "strain": "strain=ATCC 33433", "accession": "GCA_000735365.1", "taxid": 51288, "species_taxid": 51288, "relation_to_type": "suspected-type", "validated": true, "ani": 85.7851, "matched_fragments": 1160, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera georgiana", "strain": "strain=ATCC 51603", "accession": "GCA_001654985.1", "taxid": 73098, "species_taxid": 73098, "relation_to_type": "type", "validated": true, "ani": 85.692, "matched_fragments": 1146, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter vendiensis", "strain": "strain=type strain: CPO20170097", "accession": "GCA_943590815.1", "taxid": 2488306, "species_taxid": 2488306, "relation_to_type": "type", "validated": true, "ani": 82.625, "matched_fragments": 990, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 82.5335, "matched_fragments": 1021, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter youngae", "strain": "strain=NCTC13709", "accession": "GCA_900638065.1", "taxid": 133448, "species_taxid": 133448, "relation_to_type": "type", "validated": true, "ani": 81.3842, "matched_fragments": 810, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.3706, "matched_fragments": 903, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 81.3309, "matched_fragments": 925, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter mori", "strain": "strain=LMG 25706", "accession": "GCA_000211415.1", "taxid": 539813, "species_taxid": 539813, "relation_to_type": "type", "validated": true, "ani": 81.2768, "matched_fragments": 838, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", "accession": "GCA_022869965.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8391, "matched_fragments": 721, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001571285.1", "gtdb_species": "s__Kluyvera cryocrescens", "ani": 100.0, "matched_fragments": 1635, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_001266615.1", "gtdb_species": "s__Kluyvera cryocrescens_A", "ani": 89.9169, "matched_fragments": 1362, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900635475.1", "gtdb_species": "s__Kluyvera intermedia", "ani": 86.0872, "matched_fragments": 1221, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.24", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014218705.1", "gtdb_species": "s__Kluyvera sichuanensis", "ani": 85.8394, "matched_fragments": 1229, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902363335.1", "gtdb_species": "s__Kluyvera sp902363335", "ani": 85.832, "matched_fragments": 1144, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000735365.1", "gtdb_species": "s__Kluyvera ascorbata", "ani": 85.7851, "matched_fragments": 1161, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001654985.1", "gtdb_species": "s__Kluyvera georgiana", "ani": 85.7096, "matched_fragments": 1144, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.06", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016939855.1", "gtdb_species": "s__Kluyvera ascorbata_C", "ani": 85.6141, "matched_fragments": 673, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002211745.1", "gtdb_species": "s__Kluyvera georgiana_A", "ani": 85.3749, "matched_fragments": 1231, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "98.12", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014168815.1", "gtdb_species": "s__Kluyvera ascorbata_B", "ani": 85.2626, "matched_fragments": 1246, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "99.08", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_009668205.1", "gtdb_species": "s__Scandinavium sp009668205", "ani": 80.9339, "matched_fragments": 834, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Scandinavium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 31.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 4941236.667, "gc_content": 53.85, "coding_genes": 3997.25, "rRNA16S_genes": 7.0, "tRNA_genes": 85.0, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kluyvera", "cryocrescens", "NBRC", "102467" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }