{
    "type": "genome",
    "identifier": "GCF_001571305.1",
    "organism": "Erwinia persicina NBRC 102418",
    "title": "Erwinia persicina NBRC 102418",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001571305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00046721",
        "wgs_master": "BCTN00000000.1",
        "refseq_category": "na",
        "taxid": "1219360",
        "species_taxid": "55211",
        "organism_name": "Erwinia persicina NBRC 102418",
        "infraspecific_name": "strain=NBRC 102418",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/18",
        "asm_name": "ASM157130v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001571305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/571/305/GCF_001571305.1_ASM157130v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4905774",
        "genome_size_ungapped": "4905774",
        "gc_percent": "55.500000",
        "replicon_count": "0",
        "scaffold_count": "66",
        "contig_count": "66",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001571305.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "4612",
        "protein_coding_gene_count": "4475",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-18",
    "dateModified": "2016-02-18",
    "datePublished": "2016-02-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Erwinia persicina NBRC 102418"
        ],
        "sample_taxid": [
            "1219360"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.392 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4905774",
        "Number of Sequences": "66",
        "Longest Sequences (bp)": "692481",
        "N50 (bp)": "228274",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.4",
        "Number of CDSs": "4505",
        "Average Protein Length": "316.5",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Erwinia persicina",
                "strain": "strain=NBRC 102418",
                "accession": "GCA_001571305.1",
                "taxid": 55211,
                "species_taxid": 55211,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1600,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Erwinia aphidicola",
                "strain": "strain=X001",
                "accession": "GCA_024169515.1",
                "taxid": 68334,
                "species_taxid": 68334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2729,
                "matched_fragments": 1087,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia aphidicola",
                "strain": "strain=JCM 21238",
                "accession": "GCA_014773485.1",
                "taxid": 68334,
                "species_taxid": 68334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2198,
                "matched_fragments": 1086,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia pyrifoliae",
                "strain": "strain=DSM 12163",
                "accession": "GCA_000026985.1",
                "taxid": 79967,
                "species_taxid": 79967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4303,
                "matched_fragments": 722,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia piriflorinigrans",
                "strain": "strain=CFBP 5888",
                "accession": "GCA_001050515.1",
                "taxid": 665097,
                "species_taxid": 665097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1056,
                "matched_fragments": 743,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia tasmaniensis",
                "strain": "strain=Et1/99",
                "accession": "GCA_000026185.1",
                "taxid": 338565,
                "species_taxid": 338565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0499,
                "matched_fragments": 758,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia amylovora",
                "strain": "strain=NBRC 12687",
                "accession": "GCA_000696075.1",
                "taxid": 552,
                "species_taxid": 552,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9989,
                "matched_fragments": 721,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia phyllosphaerae",
                "strain": "strain=CMYE1",
                "accession": "GCA_019132875.1",
                "taxid": 2853256,
                "species_taxid": 2853256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9293,
                "matched_fragments": 658,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea deleyi",
                "strain": "strain=LMG24200",
                "accession": "GCA_022647325.1",
                "taxid": 470932,
                "species_taxid": 470932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1028,
                "matched_fragments": 684,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6934,
                "matched_fragments": 477,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea stewartii subsp. indologenes",
                "strain": "strain=LMG 2632",
                "accession": "GCA_000757405.2",
                "taxid": 66270,
                "species_taxid": 66269,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6435,
                "matched_fragments": 493,
                "total_fragments": 1603,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001571305.1",
                "gtdb_species": "s__Erwinia persicina",
                "ani": 100.0,
                "matched_fragments": 1600,
                "total_fragments": 1603,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 13,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014838825.1",
                "gtdb_species": "s__Erwinia persicina_A",
                "ani": 93.6113,
                "matched_fragments": 1443,
                "total_fragments": 1603,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "99.46",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012271765.1",
                "gtdb_species": "s__Erwinia rhapontici",
                "ani": 84.6237,
                "matched_fragments": 1229,
                "total_fragments": 1603,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "96.56",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_009738185.1",
                "gtdb_species": "s__Erwinia sp009738185",
                "ani": 83.9848,
                "matched_fragments": 1115,
                "total_fragments": 1603,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.50",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014773485.1",
                "gtdb_species": "s__Erwinia aphidicola",
                "ani": 83.2185,
                "matched_fragments": 1087,
                "total_fragments": 1603,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_003751505.1",
                "gtdb_species": "s__Erwinia sp003751505",
                "ani": 81.6592,
                "matched_fragments": 928,
                "total_fragments": 1603,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001050515.1",
                "gtdb_species": "s__Erwinia piriflorinigrans",
                "ani": 81.1188,
                "matched_fragments": 743,
                "total_fragments": 1603,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.301,
        "doubling_h": 0.093,
        "growth_tmp": 31.0,
        "optimum_tmp": 27.5,
        "optimum_ph": null,
        "genome_size": 4959712.333,
        "gc_content": 55.29,
        "coding_genes": 4501.0,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 82.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Erwinia",
        "persicina",
        "NBRC",
        "102418"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}