{ "type": "genome", "identifier": "GCF_001571345.1", "organism": "Komagataeibacter xylinus NBRC 15237", "title": "Komagataeibacter xylinus NBRC 15237", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001571345.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046750", "wgs_master": "BCTP00000000.1", "refseq_category": "na", "taxid": "1220579", "species_taxid": "28448", "organism_name": "Komagataeibacter xylinus NBRC 15237", "infraspecific_name": "strain=NBRC 15237", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/18", "asm_name": "ASM157134v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001571345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/571/345/GCF_001571345.1_ASM157134v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3625978", "genome_size_ungapped": "3625978", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "156", "contig_count": "156", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001571345.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "3559", "protein_coding_gene_count": "3390", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-18", "dateModified": "2016-02-18", "datePublished": "2016-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Komagataeibacter xylinus NBRC 15237" ], "sample_taxid": [ "1220579" ], "sample_host_organism": [], 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"below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001571345.1", "gtdb_species": "s__Komagataeibacter xylinus", "ani": 100.0, "matched_fragments": 1132, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.56", "min_intra_species_ani": "99.15", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_004302915.1", "gtdb_species": "s__Komagataeibacter xylinus_C", "ani": 94.0487, "matched_fragments": 938, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003207865.1", "gtdb_species": "s__Komagataeibacter sucrofermentans", "ani": 92.6543, "matched_fragments": 909, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003207795.1", "gtdb_species": "s__Komagataeibacter nataicola", "ani": 92.4348, "matched_fragments": 909, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.284, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 27.5, "optimum_tmp": 30.0, "optimum_ph": 5.9, "genome_size": 3744385.111, "gc_content": 59.869, "coding_genes": 3362.25, "rRNA16S_genes": 4.5, "tRNA_genes": 57.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 1.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Komagataeibacter", "xylinus", "NBRC", "15237" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }