{ "type": "genome", "identifier": "GCF_001571365.1", "organism": "Achromobacter denitrificans NBRC 15125", "title": "Achromobacter denitrificans NBRC 15125", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001571365.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046748", "wgs_master": "BCTQ00000000.1", "refseq_category": "na", "taxid": "1255278", "species_taxid": "32002", "organism_name": "Achromobacter denitrificans NBRC 15125", "infraspecific_name": "strain=NBRC 15125", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/18", "asm_name": "ASM157136v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001571365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/571/365/GCF_001571365.1_ASM157136v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6700253", "genome_size_ungapped": "6700253", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "98", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001571365.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "6313", "protein_coding_gene_count": "6196", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-18", "dateModified": "2016-02-18", "datePublished": "2016-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter denitrificans NBRC 15125" ], "sample_taxid": [ "1255278" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.831 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6700253", "Number of Sequences": "98", "Longest Sequences (bp)": "516154", "N50 (bp)": "142232", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.6", "Number of CDSs": "6157", "Average Protein Length": "325.3", "Coding Ratio (%)": "89.7", "Number of rRNAs": "5", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter denitrificans", "strain": "strain=NBRC 15125", "accession": "GCA_001571365.1", "taxid": 32002, "species_taxid": 32002, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 82.5192, "matched_fragments": 930, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.8079, "matched_fragments": 465, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 77.4486, "matched_fragments": 526, "total_fragments": 2187, "ani_threshold": 95, "status": 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