{
    "type": "genome",
    "identifier": "GCF_001573155.1",
    "organism": "Aequorivita aquimaris",
    "title": "Aequorivita aquimaris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001573155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03075687",
        "wgs_master": "JRWG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1548749",
        "species_taxid": "1548749",
        "organism_name": "Aequorivita aquimaris",
        "infraspecific_name": "strain=D-24",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/25",
        "asm_name": "ASM157315v1",
        "asm_submitter": "FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA",
        "gbrs_paired_asm": "GCA_001573155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/573/155/GCF_001573155.1_ASM157315v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3147268",
        "genome_size_ungapped": "3147268",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "66",
        "contig_count": "66",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001573155.1-RS_2024_08_04",
        "annotation_date": "2024-08-04",
        "total_gene_count": "2954",
        "protein_coding_gene_count": "2880",
        "non_coding_gene_count": "44",
        "pubmed_id": "27334651"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-25",
    "dateModified": "2016-02-25",
    "datePublished": "2016-02-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aequorivita aquimaris"
        ],
        "sample_taxid": [
            "1548749"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Malaysia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.889 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3147268",
        "Number of Sequences": "66",
        "Longest Sequences (bp)": "608951",
        "N50 (bp)": "439587",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "2813",
        "Average Protein Length": "328.3",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "5",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Aequorivita vladivostokensis",
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                "ani_threshold": 95,
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            {
                "organism_name": "Aequorivita antarctica",
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                "ani_threshold": 95,
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            },
            {
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                "species_taxid": 101385,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomarinibacterium sedimenti",
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            },
            {
                "organism_name": "Algibacter pacificus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Hyunsoonleella aquatilis",
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                "min_intra_species_ani": "N/A",
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}