{
    "type": "genome",
    "identifier": "GCF_001577775.1",
    "organism": "Pyrococcus kukulkanii",
    "title": "Pyrococcus kukulkanii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ecole Normale Superieure de Lyon",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001577775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03323778",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1609559",
        "species_taxid": "1609559",
        "organism_name": "Pyrococcus kukulkanii",
        "infraspecific_name": "strain=NCB100",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/29",
        "asm_name": "ASM157777v1",
        "asm_submitter": "Ecole Normale Superieure de Lyon",
        "gbrs_paired_asm": "GCA_001577775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/577/775/GCF_001577775.1_ASM157777v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "1977126",
        "genome_size_ungapped": "1977126",
        "gc_percent": "44.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001577775.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "2268",
        "protein_coding_gene_count": "2166",
        "non_coding_gene_count": "66",
        "pubmed_id": "27189596"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-29",
    "dateModified": "2016-02-29",
    "datePublished": "2016-02-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pyrococcus kukulkanii"
        ],
        "sample_taxid": [
            "1609559"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mexico: Guaymais basin, \u00e2\u0080\u009cRebecca\u00e2\u0080\u0099s Roost\u00e2\u0080\u009d vent site, 1997m depth"
        ],
        "sample_host_location_id": [],
        "data_size": "0.562 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1977126",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1977126",
        "N50 (bp)": "1977126",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.6",
        "Number of CDSs": "2192",
        "Average Protein Length": "275.0",
        "Coding Ratio (%)": "91.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermococcus guaymasensis",
                "strain": "strain=DSM 11113",
                "accession": "GCA_000816105.1",
                "taxid": 110164,
                "species_taxid": 110164,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8812,
                "matched_fragments": 79,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus nautili",
                "strain": "strain=30-1",
                "accession": "GCA_000585495.1",
                "taxid": 195522,
                "species_taxid": 195522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3234,
                "matched_fragments": 83,
                "total_fragments": 659,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus thioreducens",
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                "species_taxid": 277988,
                "relation_to_type": "type",
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                "ani": 76.9639,
                "matched_fragments": 62,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus cleftensis",
                "strain": "strain=CL1",
                "accession": "GCA_000265525.1",
                "taxid": 163003,
                "species_taxid": 163003,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.904,
                "matched_fragments": 68,
                "total_fragments": 659,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus thioreducens",
                "strain": "strain=OGL-20P",
                "accession": "GCA_900109425.1",
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                "species_taxid": 277988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8794,
                "matched_fragments": 63,
                "total_fragments": 659,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001577775.1",
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                "matched_fragments": 659,
                "total_fragments": 659,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Pyrococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003660485.1",
                "gtdb_species": "s__Pyrococcus sp003660485",
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                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Pyrococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002214605.1",
                "gtdb_species": "s__Pyrococcus chitonophagus",
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                "num_clustered_genomes": 2,
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            {
                "accession": "GCF_000263735.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012027325.1",
                "gtdb_species": "s__Thermococcus_B sp012027325",
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                "matched_fragments": 67,
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                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015523185.1",
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                "mean_intra_species_ani": "99.10",
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                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
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        "genome_size": 1977127.0,
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        "coding_genes": 2030.5,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "kukulkanii"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}