{ "type": "genome", "identifier": "GCF_001579945.1", "organism": "Steroidobacter denitrificans", "title": "Steroidobacter denitrificans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001579945.1", "bioproject": "PRJNA224116", "biosample": "SAMN03776156", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "465721", "species_taxid": "465721", "organism_name": "Steroidobacter denitrificans", "infraspecific_name": "strain=DSM 18526", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/03", "asm_name": "ASM157994v1", "asm_submitter": "Academia Sinica", "gbrs_paired_asm": "GCA_001579945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/579/945/GCF_001579945.1_ASM157994v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3467246", "genome_size_ungapped": "3467246", "gc_percent": "61.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001579945.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3145", "protein_coding_gene_count": "3019", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-03", "dateModified": "2016-03-03", "datePublished": "2016-03-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Steroidobacter denitrificans" ], "sample_taxid": [ "465721" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Aachen" ], 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95, "status": "conclusive" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 78.3864, "matched_fragments": 63, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 78.2588, "matched_fragments": 70, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter gossypii", "strain": "strain=S1-65", "accession": "GCA_016801985.1", "taxid": 2805490, "species_taxid": 2805490, "relation_to_type": "type", "validated": true, "ani": 77.46, "matched_fragments": 263, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter soli", "strain": "strain=JW-3", "accession": "GCA_004138485.1", "taxid": 2497877, "species_taxid": 2497877, "relation_to_type": "type", "validated": true, "ani": 77.3629, "matched_fragments": 254, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter agariperforans", "strain": "strain=KA5-B", "accession": "GCA_004138335.1", "taxid": 268404, "species_taxid": 268404, "relation_to_type": "type", "validated": true, "ani": 77.3582, "matched_fragments": 273, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter cummioxidans", "strain": "strain=35Y", "accession": "GCA_003104955.1", "taxid": 1803913, "species_taxid": 1803913, "relation_to_type": "type", "validated": true, "ani": 77.3014, "matched_fragments": 259, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Povalibacter uvarum", "strain": "strain=DSM 26723", "accession": "GCA_014202975.1", "taxid": 732238, "species_taxid": 732238, "relation_to_type": "type", "validated": true, "ani": 77.1686, "matched_fragments": 232, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 76.5764, "matched_fragments": 53, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 76.351, "matched_fragments": 80, "total_fragments": 1155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans acidivorans", "strain": "strain=DSM 23606", "accession": "GCA_003182095.1", "taxid": 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