{ "type": "genome", "identifier": "GCF_001580845.1", "organism": "Gluconobacter albidus", "title": "Gluconobacter albidus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001580845.1", "bioproject": "PRJNA224116", "biosample": "SAMN03799284", "wgs_master": "LHZN00000000.1", "refseq_category": "na", "taxid": "318683", "species_taxid": "318683", "organism_name": "Gluconobacter albidus", "infraspecific_name": "strain=LMG 1356", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/07", "asm_name": "ASM158084v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_001580845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/580/845/GCF_001580845.1_ASM158084v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3270193", "genome_size_ungapped": "3270193", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "146", "contig_count": "146", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001580845.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "3160", "protein_coding_gene_count": "3045", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-07", "dateModified": "2016-03-07", "datePublished": "2016-03-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Gluconobacter albidus" ], "sample_taxid": [ "318683" ], "sample_host_organism": [ "Dahlia coccinea" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.927 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3270193", "Number of Sequences": "146", "Longest Sequences (bp)": "212994", "N50 (bp)": "60557", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "2996", "Average Protein Length": "319.7", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gluconobacter albidus", "strain": "strain=NBRC 3250", "accession": "GCA_002723915.1", "taxid": 318683, "species_taxid": 318683, "relation_to_type": "type", "validated": true, "ani": 99.9985, "matched_fragments": 1010, "total_fragments": 1024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gluconobacter cadivus", "strain": "strain=LMG 1744", "accession": "GCA_015244745.1", "taxid": 2728101, "species_taxid": 2728101, "relation_to_type": "type", "validated": true, "ani": 91.1217, "matched_fragments": 836, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter kondonii", "strain": "strain=NBRC 3266", "accession": "GCA_002723995.1", "taxid": 941463, "species_taxid": 941463, "relation_to_type": "type", "validated": true, "ani": 90.6633, "matched_fragments": 804, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter cerevisiae", "strain": "strain=LMG 27748", "accession": "GCA_015244675.1", "taxid": 1379734, "species_taxid": 1379734, "relation_to_type": "type", "validated": true, "ani": 89.5268, "matched_fragments": 756, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter cerevisiae", "strain": "strain=DSM 27644", "accession": "GCA_018811965.1", "taxid": 1379734, "species_taxid": 1379734, "relation_to_type": "type", "validated": true, "ani": 89.5218, "matched_fragments": 770, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 86.8245, "matched_fragments": 716, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter sphaericus", "strain": "strain=NBRC 12467", "accession": "GCA_006539125.1", "taxid": 574987, "species_taxid": 574987, "relation_to_type": "type", "validated": true, "ani": 86.417, "matched_fragments": 687, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter sphaericus", "strain": "strain=LMG1414", "accession": "GCA_015244605.1", "taxid": 574987, "species_taxid": 574987, "relation_to_type": "type", "validated": true, "ani": 86.3985, "matched_fragments": 706, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=R-71646", "accession": "GCA_015244705.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 86.3407, "matched_fragments": 727, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": "strain=NBRC 102526", "accession": "GCA_024054035.1", "taxid": 415421, "species_taxid": 415421, "relation_to_type": "type", "validated": true, "ani": 77.7995, "matched_fragments": 163, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002723915.1", "gtdb_species": "s__Gluconobacter albidus", "ani": 99.9985, "matched_fragments": 1010, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_015244745.1", "gtdb_species": "s__Gluconobacter cadivus", "ani": 91.1239, "matched_fragments": 836, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "96.31", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002723995.1", "gtdb_species": "s__Gluconobacter kondonii", "ani": 90.6483, "matched_fragments": 804, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.23", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_015244675.1", "gtdb_species": "s__Gluconobacter cerevisiae", "ani": 89.514, "matched_fragments": 757, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018256155.1", "gtdb_species": "s__Gluconobacter sp018256155", "ani": 86.9308, "matched_fragments": 753, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009547075.1", "gtdb_species": "s__Gluconobacter sp009547075", "ani": 86.8514, "matched_fragments": 714, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006539125.1", "gtdb_species": 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kanchanaburiensis", "ani": 85.784, "matched_fragments": 638, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014132155.1", "gtdb_species": "s__Gluconobacter_A sp014132155", "ani": 79.9557, "matched_fragments": 396, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.46", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.153, "cell_length": 0.301, "doubling_h": -0.027, "growth_tmp": 27.381, "optimum_tmp": 30.0, "optimum_ph": 5.625, "genome_size": 3396202.0, "gc_content": 58.26, "coding_genes": 2958.5, "rRNA16S_genes": 5.0, "tRNA_genes": 57.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gluconobacter", "albidus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }