{ "type": "genome", "identifier": "GCF_001580885.1", "organism": "Gluconobacter roseus", "title": "Gluconobacter roseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001580885.1", "bioproject": "PRJNA224116", "biosample": "SAMN03799287", "wgs_master": "LHZP00000000.1", "refseq_category": "na", "taxid": "586239", "species_taxid": "586239", "organism_name": "Gluconobacter roseus", "infraspecific_name": "strain=LMG 1418", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/07", "asm_name": "ASM158088v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_001580885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/580/885/GCF_001580885.1_ASM158088v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2881212", "genome_size_ungapped": "2881212", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001580885.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "2686", "protein_coding_gene_count": "2569", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-07", "dateModified": "2016-03-07", "datePublished": "2016-03-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Gluconobacter roseus" ], "sample_taxid": [ "586239" ], "sample_host_organism": [ "Diospyros sp." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.812 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2881212", "Number of Sequences": "29", "Longest Sequences (bp)": "535933", "N50 (bp)": "189421", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "2658", "Average Protein Length": "325.4", "Coding Ratio (%)": "90.1", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gluconobacter roseus", "strain": "strain=NBRC 3990", "accession": "GCA_006538885.1", "taxid": 586239, "species_taxid": 586239, "relation_to_type": "type", "validated": true, "ani": 99.994, "matched_fragments": 942, "total_fragments": 946, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gluconobacter vitians", "strain": "strain=LMG 31484", "accession": "GCA_015244565.1", "taxid": 2728102, "species_taxid": 2728102, "relation_to_type": "type", "validated": true, "ani": 93.131, "matched_fragments": 797, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter oxydans", "strain": "strain=NBRC 14819", "accession": "GCA_006539685.1", "taxid": 442, "species_taxid": 442, "relation_to_type": "type", "validated": true, "ani": 90.3764, "matched_fragments": 712, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter oxydans", "strain": "strain=DSM 3503", "accession": "GCA_004346605.1", "taxid": 442, "species_taxid": 442, "relation_to_type": "type", "validated": true, "ani": 90.3464, "matched_fragments": 722, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter oxydans", "strain": "strain=LMG1408", "accession": "GCA_015244575.1", "taxid": 442, "species_taxid": 442, "relation_to_type": "type", "validated": true, "ani": 90.2846, "matched_fragments": 723, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=LMG 1764", "accession": "GCA_001580675.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 89.8184, "matched_fragments": 743, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=R-71646", "accession": "GCA_015244705.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 89.6623, "matched_fragments": 774, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, 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2880758.5, "gc_content": 59.856, "coding_genes": 2938.4, "rRNA16S_genes": 4.75, "tRNA_genes": 56.643, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gluconobacter", "roseus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }